Protein Concepts Dictionary

Tableau information

Concept source:  d4i5ra_  amino acid (a.a.) range (GLY95)(VAL228)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY95)  (ASN101) E1
	  (TYR103)  (ALA112) H2
	  (PRO119)  (VAL131) H3
	  (VAL131)  (LEU137) E4
	  (THR139)  (GLY160) H5
	  (ASN162)  (PRO173) E6
	  (GLY192)  (TYR210) H7
	  (ARG214)  (VAL218) E8
	  (ASP222)  (VAL228) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      -43.6°   H2                                                      
H3      122.0°  165.6°   H3                                               
E4       66.1°  108.2°  -57.5°   E4                                        
H5      132.3°  104.0°  -88.0° -138.5°   H5                                 
E6      -56.1°   84.3°   84.2°  -37.7° -171.2°   E6                          
H7      123.3°  100.6°  -89.8°  133.7°  -10.5°  171.4°   H7                   
E8      -62.7°   67.0° -106.6°  -70.3°  148.5°  -32.7°  155.9°   E8            
H9      -98.9° -101.2°   77.5°  -73.1° -125.0°   49.0° -135.5°  -38.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1dysa_ :     (GLY8)  (VAL145)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6b [TaxId: 34413]
 d3voga_ :    (GLY83)  (VAL216)   [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
 d1ocja_ :    (GLY96)  (VAL232)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6a [TaxId: 34413]
 d1gz1a_ :    (GLY96)  (ASN234)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6a [TaxId: 34413]
 d4i5ua_ :    (GLY95)  (THR229)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |automated matches |Fungus (Humicola insolens) [TaxId: 34413]
 d1qk0a_ :    (GLY95)  (VAL227)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Trichoderma reesei, Cel6a [TaxId: 51453]
 d4i5ra_ :    (GLY95)  (VAL228)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |automated matches |Fungus (Humicola insolens) [TaxId: 34413]
 d1oc5a_ :    (GLY96)  (VAL232)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6a [TaxId: 34413]
 d1cb2a_ :    (GLY95)  (VAL227)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Trichoderma reesei, Cel6a [TaxId: 51453]
 d1hgya_ :    (GLY95)  (THR228)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Trichoderma reesei, Cel6a [TaxId: 51453]
 d1hgwa_ :    (GLY95)  (THR228)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Trichoderma reesei, Cel6a [TaxId: 51453]
 d1bvwa_ :    (GLY96)  (VAL232)   [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6a [TaxId: 34413]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.6