Protein Concepts Dictionary

Tableau information

Concept source:  d1z54c_  amino acid (a.a.) range (GLU2)(HIS130)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHHEEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLU2)    (ARG6) E1
	   (HIS21)   (ALA40) H2
	   (TYR44)   (ARG50) H3
	   (GLY51)   (THR62) E4
	   (VAL73)   (LEU79) E5
	   (ALA80)   (SER84) E6
	   (ARG85)   (ARG95) E7
	  (GLU102)  (GLY112) E8
	  (GLU120)  (HIS130) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      125.7°   H2                                                      
H3     -111.3°   79.9°   H3                                               
E4      -80.2°  134.8° -128.9°   E4                                        
E5      156.0°  -55.5°   45.0°  116.6°   E5                                 
E6      114.9°  -62.6°   18.5°  145.9°  -41.7°   E6                          
E7      -49.3°  115.9° -159.5°  -49.5°  154.7° -161.4°   E7                   
E8      104.1°  -59.5°   29.9°  158.6°  -53.9°  -14.8°  147.0°   E8            
H9      -91.8°  104.2° -148.6°  -32.2° -111.6° -153.2°   44.3° -161.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2egic_ :     (PHE3)  (LEU126)   [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
 d2egid_ :     (PHE3)  (LEU126)   [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
 d1z54a1 :     (SER3)  (HIS130)   [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Probable thioesterase TTHA0908 |Thermus thermophilus [TaxId: 274]
 d2cyec_ :     (PRO5)  (GLY130)   [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Probable thioesterase TTHA1846 |Thermus thermophilus [TaxId: 274]
 d1z54d_ :     (MET1)  (LEU129)   [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Probable thioesterase TTHA0908 |Thermus thermophilus [TaxId: 274]
 d1z54c_ :     (GLU2)  (HIS130)   [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Probable thioesterase TTHA0908 |Thermus thermophilus [TaxId: 274]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.38