Protein Concepts Dictionary

Tableau information

Concept source:  d2j4ee_  amino acid (a.a.) range (CYS33)(TYR188)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEHHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (CYS33)   (ALA37) E1
	   (PRO49)   (GLN65) H2
	   (VAL68)   (PHE77) E3
	   (ILE88)   (LYS94) H4
	   (LYS96)  (PHE107) H5
	  (LYS110)  (THR122) E6
	  (SER126)  (SER137) E7
	  (LYS169)  (VAL175) H8
	  (SER176)  (TYR188) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2       87.0°   H2                                                      
E3      -69.2°  154.4°   E3                                               
H4      -35.3°   93.3°   61.9°   H4                                        
H5       97.8°  156.0°  -43.5°  104.3°   H5                                 
E6      111.6°  -32.8°  168.2° -125.9°  126.2°   E6                          
E7      -77.6°  133.3°  -34.3°   50.7°  -70.6°  157.0°   E7                   
H8      119.7° -108.0°   92.5°  147.5°   49.4°  -76.9°  118.0°   H8            
H9      139.9°  -60.7°  144.8° -152.4°  103.3°  -30.0°  141.6°  -58.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1b78a_ :    (ASP33)  (ARG192)   [view usage] : c.51.4.1 |Anticodon-binding domain-like |ITPase-like |ITPase (Ham1) |XTP pyrophosphatase |Methanococcus jannaschii [TaxId: 2190]
 d2j4ed_ :    (THR34)  (PHE189)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2j4eb_ :    (THR34)  (PHE189)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2dvoa_ :    (GLY24)  (LYS185)   [view usage] : c.51.4.1 |Anticodon-binding domain-like |ITPase-like |ITPase (Ham1) |XTP pyrophosphatase |Pyrococcus horikoshii [TaxId: 53953]
 d2q16b_ :    (ASP27)  (ARG195)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d2e5xa_ :    (GLU26)  (LYS185)   [view usage] : c.51.4.1 |Anticodon-binding domain-like |ITPase-like |ITPase (Ham1) |XTP pyrophosphatase |Pyrococcus horikoshii [TaxId: 53953]
 d2i5da_ :    (CYS33)  (TYR188)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2j4ee_ :    (CYS33)  (TYR188)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4f95a_ :    (CYS33)  (PHE189)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.51