Tableau information
Concept source: d4mmpa_ amino acid (a.a.) range (ASP6)(ASN117)
nSSEs in this Concept: 9
String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP6) (VAL12) E1
(SER17) (GLU32) H2
(LYS37) (ILE42) E3
(ASP51) (GLY61) H4
(ASP64) (GLY68) E5
(ALA71) (TYR76) H6
(PHE77) (PHE83) H7
(PHE92) (THR102) H8
(THR102) (ASN117) H9
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 168.8° H2
E3 -21.6° -169.5° E3
H4 -153.2° 23.7° 153.0° H4
E5 -20.8° 148.0° -42.4° -140.8° E5
H6 99.4° -85.3° 88.4° -64.9° 109.0° H6
H7 -62.8° 113.4° -72.7° 133.9° -56.7° -161.1° H7
H8 128.3° -50.3° 127.3° -26.6° 123.4° 43.0° 153.4° H8
H9 124.0° -67.0° 102.5° -65.7° 144.4° 53.7° -129.5° -68.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4napb_ : (PRO32) (VAL142) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
d4maga_ : (ALA1) (ASN113) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio cholerae [TaxId: 593588]
d4nhbb_ : (THR29) (ASN131) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 525146]
d4mmpa_ : (ASP6) (ASN117) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Pasteurella multocida [TaxId: 1169409]
d4n6da_ : (ASP29) (PHE139) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio salexigens [TaxId: 526222]
d4pgnb_ : (GLN31) (VAL142) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
d4oanb_ : (TYR36) (ALA143) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d4ovsa_ : (GLU23) (LYS133) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sulfurospirillum deleyianum [TaxId: 525898]
d4pgnc_ : (LEU35) (VAL142) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
d4o94c_ : (ILE27) (ASN137) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d4mija_ : (PHE33) (SER137) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |TRAP dicarboxylate transporter |Polaromonas [TaxId: 296591]
d2zzva_ : (ARG33) (GLY146) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4n6ka_ : (TYR29) (LYS139) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio salexigens [TaxId: 526222]
d4n8ga_ : (ALA28) (GLU140) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d4o94b_ : (ILE27) (SER132) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d4n8gd_ : (ALA28) (GLU140) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d4ovta_ : (ALA24) (GLY136) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ochrobactrum anthropi [TaxId: 439375]
d2zzxc_ : (ARG2033) (GLY2146) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4pfba_ : (ILE27) (GLY135) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Fusobacterium nucleatum [TaxId: 190304]
d4o7mb_ : (THR34) (SER139) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella loihica [TaxId: 323850]
d4napd_ : (PRO32) (VAL142) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
d4napa_ : (PRO32) (VAL142) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
d4pgna_ : (PRO32) (VAL142) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
d4pafa_ : (PHE29) (GLY138) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
d4n8gb_ : (THR29) (GLU140) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d4p47a_ : (GLN30) (GLY140) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ochrobactrum anthropi [TaxId: 439375]
d4oana_ : (TYR36) (LYS142) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94