Protein Concepts Dictionary

Tableau information

Concept source:  d4mmpa_  amino acid (a.a.) range (ASP6)(ASN117)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP6)   (VAL12) E1
	   (SER17)   (GLU32) H2
	   (LYS37)   (ILE42) E3
	   (ASP51)   (GLY61) H4
	   (ASP64)   (GLY68) E5
	   (ALA71)   (TYR76) H6
	   (PHE77)   (PHE83) H7
	   (PHE92)  (THR102) H8
	  (THR102)  (ASN117) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      168.8°   H2                                                      
E3      -21.6° -169.5°   E3                                               
H4     -153.2°   23.7°  153.0°   H4                                        
E5      -20.8°  148.0°  -42.4° -140.8°   E5                                 
H6       99.4°  -85.3°   88.4°  -64.9°  109.0°   H6                          
H7      -62.8°  113.4°  -72.7°  133.9°  -56.7° -161.1°   H7                   
H8      128.3°  -50.3°  127.3°  -26.6°  123.4°   43.0°  153.4°   H8            
H9      124.0°  -67.0°  102.5°  -65.7°  144.4°   53.7° -129.5°  -68.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4napb_ :    (PRO32)  (VAL142)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
 d4maga_ :     (ALA1)  (ASN113)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio cholerae [TaxId: 593588]
 d4nhbb_ :    (THR29)  (ASN131)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 525146]
 d4mmpa_ :     (ASP6)  (ASN117)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Pasteurella multocida [TaxId: 1169409]
 d4n6da_ :    (ASP29)  (PHE139)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio salexigens [TaxId: 526222]
 d4pgnb_ :    (GLN31)  (VAL142)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
 d4oanb_ :    (TYR36)  (ALA143)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d4ovsa_ :    (GLU23)  (LYS133)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sulfurospirillum deleyianum [TaxId: 525898]
 d4pgnc_ :    (LEU35)  (VAL142)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
 d4o94c_ :    (ILE27)  (ASN137)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d4mija_ :    (PHE33)  (SER137)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |TRAP dicarboxylate transporter |Polaromonas [TaxId: 296591]
 d2zzva_ :    (ARG33)  (GLY146)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d4n6ka_ :    (TYR29)  (LYS139)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio salexigens [TaxId: 526222]
 d4n8ga_ :    (ALA28)  (GLU140)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
 d4o94b_ :    (ILE27)  (SER132)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d4n8gd_ :    (ALA28)  (GLU140)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
 d4ovta_ :    (ALA24)  (GLY136)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ochrobactrum anthropi [TaxId: 439375]
 d2zzxc_ :  (ARG2033) (GLY2146)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d4pfba_ :    (ILE27)  (GLY135)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Fusobacterium nucleatum [TaxId: 190304]
 d4o7mb_ :    (THR34)  (SER139)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella loihica [TaxId: 323850]
 d4napd_ :    (PRO32)  (VAL142)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
 d4napa_ :    (PRO32)  (VAL142)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
 d4pgna_ :    (PRO32)  (VAL142)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
 d4pafa_ :    (PHE29)  (GLY138)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
 d4n8gb_ :    (THR29)  (GLU140)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
 d4p47a_ :    (GLN30)  (GLY140)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ochrobactrum anthropi [TaxId: 439375]
 d4oana_ :    (TYR36)  (LYS142)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94