Protein Concepts Dictionary

Tableau information

Concept source:  d2qtra_  amino acid (a.a.) range (MET1)(TYR112)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET1)    (GLY9) E1
	   (TYR16)   (ALA28) H2
	   (GLU33)   (ASN39) E3
	   (SER52)   (THR64) H4
	   (HIS69)   (LEU74) E5
	   (LEU74)   (ARG79) H6
	   (THR85)   (TYR96) H7
	  (GLN100)  (GLY106) E8
	  (GLY106)  (TYR112) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      165.3°   H2                                                      
E3      -32.7°  142.4°   E3                                               
H4      130.1°  -52.3°  162.4°   H4                                        
E5      -60.8°  118.3°  -28.8° -168.7°   E5                                 
H6      -56.0°  123.5°  -24.7° -172.0°   -5.2°   H6                          
H7      153.4°  -41.3°  140.9°  -54.7°  114.3°  117.4°   H7                   
E8      -30.2°  141.1°  -59.5°  103.0°  -88.3°  -84.2°  152.3°   E8            
H9       92.0°  -79.4°   63.3° -128.3°   47.1°   51.6° -102.4°  104.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3mlaa_ :     (LYS3)  (LYS115)   [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d1kaqa_ :     (LYS3)  (TYR112)   [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Bacillus subtilis [TaxId: 1423]
 d2qtra_ :     (MET1)  (TYR112)   [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d1yula_ :     (ARG4)  (LEU114)   [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1yuma_ :     (ARG4)  (CYS112)   [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1k4ka_ :     (LEU4)  (THR113)   [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Escherichia coli [TaxId: 562]
 d3e27d_ :     (ILE4)  (LEU113)   [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d3e27b_ :     (LYS3)  (TYR112)   [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d1yuna_ :     (ARG4)  (LEU114)   [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.26