Protein Concepts Dictionary

Tableau information

Concept source:  d2liva_  amino acid (a.a.) range (ILE3)(THR118)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ILE3)    (GLY9) E1
	   (ALA16)   (GLY37) H2
	   (LYS43)   (ALA52) E3
	   (ASP54)   (GLY69) H4
	   (LYS71)   (GLY75) E5
	   (SER79)   (GLU92) H6
	   (LEU95)   (PRO99) E7
	  (PRO104)  (ARG109) H8
	  (LEU113)  (THR118) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      161.8°   H2                                                      
E3      -25.5°  172.6°   E3                                               
H4      172.3°  -21.6°  151.5°   H4                                        
E5      -29.0°  132.8°  -54.5°  152.7°   E5                                 
H6      152.5°  -44.4°  128.4°  -29.6° -166.3°   H6                          
E7      -43.7°  118.4°  -68.9°  136.3°  -17.3° -162.0°   E7                   
H8      135.9°  -59.0°  114.4°  -47.5° -151.1°  -18.4° -161.2°   H8            
E9      -53.1°  109.1°  -78.3°  127.2°  -25.9°  152.9°   -9.3° -157.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4gpaa_ :   (CYS132)  (VAL244)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3h5vc_ :   (PHE127)  (VAL242)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1z15a_ :     (ILE3)  (THR118)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3uk0a_ :    (ILE31)  (PRO139)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316057]
 d2hqoa_ :     (MET1)   (PRO98)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85963]
 d2lbpa_ :     (ILE3)  (ALA118)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Leucine-binding protein |Escherichia coli [TaxId: 562]
 d2fr0a2 :  (GLY1472) (PRO1614)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Erythromycin synthase, eryAI, 1st ketoreductase module |Saccharopolyspora erythraea [TaxId: 1836]
 d3n0xa_ :    (LEU19)  (THR136)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
 d2liva_ :     (ILE3)  (THR118)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Leucine-,isoleucine-,valine-binding (LIV) protein |Escherichia coli [TaxId: 562]
 d3ipca_ :     (VAL3)  (CYS118)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
 d3td9a_ :    (VAL21)  (CYS133)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
 d1esja1 :    (PRO18)  (ASN123)   [view usage] : c.72.1.2 |Ribokinase-like |Ribokinase-like |Thiamin biosynthesis kinases |Hydroxyethylthiazole kinase (THZ kinase, ThiK) |Bacillus subtilis [TaxId: 1423]
 d4n0qb_ :    (ILE25)  (CYS140)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Brucella melitensis [TaxId: 224914]
 d3ip5a_ :     (VAL3)  (CYS118)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
 d2pv7a2 :   (HIS101)  (PHE203)   [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Prephenate dehydrogenase TyrA |Haemophilus influenzae [TaxId: 727]
 d3ucea_ :     (THR7)  (PRO158)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Vibrio vulnificus [TaxId: 196600]
 d4n0qa_ :    (ILE25)  (CYS140)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Brucella melitensis [TaxId: 224914]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2,    c.93,    c.72,    c.23