Tableau information
Concept source: d1doha_ amino acid (a.a.) range (LYS30)(MET162)
nSSEs in this Concept: 9
String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS30) (GLY36) E1
(ILE41) (GLY53) H2
(LYS55) (ALA61) E3
(THR64) (GLY78) H4
(SER79) (LYS85) E5
(VAL91) (PHE105) H6
(ASP109) (SER113) E7
(THR127) (HIS152) H8
(GLY157) (MET162) E9
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -168.0° H2
E3 -13.6° -168.3° E3
H4 156.3° -19.6° 169.9° H4
E5 -35.8° 150.4° -22.2° -167.7° E5
H6 150.0° -18.0° 156.3° -24.0° 153.9° H6
E7 -13.1° 165.8° -23.5° 147.0° -43.7° 151.4° E7
H8 169.6° -17.1° 156.6° -33.5° 134.9° -33.7° -173.3° H8
E9 -23.9° 150.6° -37.0° 133.0° -58.4° 136.5° -15.4° 166.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2z3va_ : (LYS3) (ARG137) [view usage] : c.26.2.4 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |Universal stress protein-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3dzca_ : (LYS207) (MET308) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |automated matches |Vibrio cholerae [TaxId: 666]
d3gara_ : (MET1) (PRO109) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Escherichia coli [TaxId: 562]
d1ep1b2 : (LYS112) (SER219) [view usage] : c.25.1.3 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Dihydroorotate dehydrogenase B, PyrK subunit |Dihydroorotate dehydrogenase B, PyrK subunit |Lactococcus lactis, isozyme B [TaxId: 1358]
d3i44a_ : (VAL144) (GLU249) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d2eixa2 : (LYS155) (PHE281) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Slime mold (Physarum polycephalum) [TaxId: 5791]
d3s3ta_ : (THR6) (ARG146) [view usage] : c.26.2.0 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |automated matches |automated matches |Lactobacillus plantarum [TaxId: 1590]
d2bw0a2 : (LYS2) (PRO107) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |10-formyltetrahydrofolate dehydrogenase domain 1 |Human (Homo sapiens) [TaxId: 9606]
d3toxa_ : (ALA11) (PHE146) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d4r1sb_ : (GLN7) (THR121) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Petunia x [TaxId: 4102]
d1iy8a_ : (ARG14) (THR150) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Levodione reductase |Corynebacterium aquaticum [TaxId: 144185]
d1wjga_ : (LYS3) (VAL136) [view usage] : c.26.2.4 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |Universal stress protein-like |Hypothetical protein TTHA0895 |Thermus thermophilus [TaxId: 274]
d3szab_ : (VAL107) (ASP219) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rrvb_ : (MET1) (PRO126) [view usage] : c.87.1.5 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Gtf glycosyltransferase |TDP-vancosaminyltransferase GftD |Amycolatopsis orientalis [TaxId: 31958]
d1pjqa1 : (ARG13) (ASP104) [view usage] : c.2.1.11 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Siroheme synthase N-terminal domain-like |Siroheme synthase CysG, domain 1 |Salmonella typhimurium [TaxId: 90371]
d1nlma_ : (ARG185) (PHE282) [view usage] : c.87.1.2 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Peptidoglycan biosynthesis glycosyltransferase MurG |Peptidoglycan biosynthesis glycosyltransferase MurG |Escherichia coli [TaxId: 562]
d2ax3a1 : (GLY233) (ALA343) [view usage] : c.72.1.4 |Ribokinase-like |Ribokinase-like |YjeF C-terminal domain-like |Hypothetical protein TM0922, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1zlxa_ : (ARG2) (PRO109) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Human (Homo sapiens) [TaxId: 9606]
d3r31a_ : (CYS154) (GLY260) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4cqmf_ : (ASP2) (GLY134) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e3wd_ : (LEU11) (THR153) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Type II 3-hydroxyacyl-CoA dehydrogenase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ky8a_ : (GLY159) (GLY265) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
d4l76b1 : (VAL118) (ALA211) [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d2vsna2 : (LEU206) (ASN311) [view usage] : c.87.1.12 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |O-GlcNAc transferase, OGT |O-GlcNAc transferase, OGT |Xanthomonas campestris [TaxId: 314565]
d2hrba_ : (SER5) (ILE138) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1doha_ : (LYS30) (MET162) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
d1miob_ : (LYS314) (GLY410) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, beta chain |Clostridium pasteurianum [TaxId: 1501]
d1uxva_ : (GLY159) (GLY265) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
d1tvca2 : (PRO120) (LYS244) [view usage] : c.25.1.2 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Aromatic dioxygenase reductase-like |Methane monooxygenase component C, MmoC |Methylococcus capsulatus [TaxId: 414]
d4l75a1 : (ASP111) (ALA211) [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d3kcqc_ : (ARG6) (ILE106) [view usage] : c.65.1.0 |Formyltransferase |Formyltransferase |automated matches |automated matches |Anaplasma phagocytophilum [TaxId: 212042]
d3rrba2 : (GLY233) (ALA343) [view usage] : c.72.1.4 |Ribokinase-like |Ribokinase-like |YjeF C-terminal domain-like |Hypothetical protein TM0922, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d3s3tb_ : (THR6) (ARG146) [view usage] : c.26.2.0 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |automated matches |automated matches |Lactobacillus plantarum [TaxId: 1590]
d2iftb_ : (SER55) (GLU162) [view usage] : c.66.1.46 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |YhhF-like |Putative methylase HI0767 |Haemophilus influenzae [TaxId: 727]
d1s3ia2 : (LYS2) (PRO107) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |10-formyltetrahydrofolate dehydrogenase domain 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3v8ba_ : (PRO6) (ILE143) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1f6dd_ : (LYS206) (ARG308) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Escherichia coli [TaxId: 562]
d4pvca_ : (MET1) (THR125) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1y1pa1 : (SER13) (THR131) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Aldehyde reductase II |Sporobolomyces salmonicolor [TaxId: 5005]
d2fy8a1 : (ARG116) (ARG213) [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |Potassium channel-related protein MthK |Methanothermobacter thermautotrophicus [TaxId: 145262]
d4r9va_ : (MET112) (ILE221) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Photobacterium damselae [TaxId: 38293]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, c.82, c.26, c.92, c.66, c.72, c.87, c.25, c.65