Protein Concepts Dictionary

Tableau information

Concept source:  d2h1ab_  amino acid (a.a.) range (GLY64)(ILE172)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY64)   (TRP70) E1
	   (ALA74)   (GLY95) H2
	   (GLY95)  (VAL101) E3
	  (SER106)  (TYR117) H4
	  (PRO122)  (ASP128) E5
	  (GLN130)  (ASP136) H6
	  (PRO141)  (ASN147) E7
	  (VAL153)  (GLY158) E8
	  (GLU162)  (ILE172) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2     -162.5°   H2                                                      
E3      -18.2° -153.1°   E3                                               
H4      115.7°  -71.2°  133.5°   H4                                        
E5      -48.1°  132.5°  -31.2°  150.9°   E5                                 
H6     -111.3°   85.8° -109.3°   74.2°  -89.4°   H6                          
E7      166.4°   19.2°  148.3°  -77.8°  119.3°   69.9°   E7                   
E8      -30.9°  148.2°  -49.1°   85.1°  -77.4° -108.4°  162.7°   E8            
H9      137.9°  -39.6°  119.8° -106.4°   93.1°   78.5°   28.6° -168.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3c73b_ :    (GLY64)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bacillus subtilis [TaxId: 1423]
 d1st9b_ :    (GLY63)  (ILE171)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d3erwa_ :    (LYS55)  (GLU164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2h1bc_ :    (GLY64)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d2ls5a_ :    (VAL35)  (GLU152)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
 d1su9a_ :    (GLY63)  (LEU170)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d3kcmf_ :    (VAL54)  (LEU166)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
 d3kcme_ :    (VAL54)  (SER167)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
 d2h1ab_ :    (GLY64)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d3erwg_ :    (LYS55)  (GLU164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2h1aa_ :    (GLY64)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d3erwc_ :    (LYS55)  (GLU164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2f9sb_ :    (GLY64)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d2gs3a_ :    (VAL63)  (PHE197)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1xzoa1 :    (TRP36)  (THR172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thioredoxin-like protein Sco1 (YpmQ), soluble domain |Bacillus subtilis [TaxId: 1423]
 d3c73a_ :    (GLY64)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bacillus subtilis [TaxId: 1423]
 d2h19a_ :    (GLY64)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d3erwf_ :    (LYS55)  (GLU164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d3kcmc_ :    (VAL54)  (LEU166)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.47