Protein Concepts Dictionary

Tableau information

Concept source:  d1q7ba_  amino acid (a.a.) range (LYS6)(LEU111)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS6)   (GLY12) E1
	   (ILE17)   (GLY29) H2
	   (LYS31)   (THR37) E3
	   (SER38)   (GLY50) H4
	   (ASN52)   (MET57) E5
	   (PRO63)   (ALA75) H6
	   (ASP81)   (ASN85) E7
	   (ALA87)   (ASN93) E8
	   (LYS99)  (LEU111) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2     -166.6°   H2                                                      
E3      -16.0° -163.7°   E3                                               
H4      140.7°  -33.9°  156.3°   H4                                        
E5      -36.4°  149.8°  -21.2°  175.9°   E5                                 
H6      149.4°  -17.9°  155.5°  -26.4°  157.6°   H6                          
E7      -12.6°  165.9°  -26.3°  132.6°  -43.9°  149.2°   E7                   
E8      -23.7°  164.9°  -31.4°  133.3°  -42.7°  156.6°  -14.0°   E8            
H9     -170.8°    9.9°  172.1°  -30.3°  152.8°  -23.5° -161.6° -155.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4nbwa_ :    (ARG13)  (SER127)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Plesiocystis pacifica [TaxId: 391625]
 d4rgba_ :    (GLY20)  (ILE139)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
 d1zbqa1 :    (VAL11)  (LEU124)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Peroxisomal multifunctional enzyme type 2 |Human (Homo sapiens) [TaxId: 9606]
 d3ai1a_ :     (LYS8)  (LEU115)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Gluconobacter frateurii [TaxId: 38308]
 d4nbub_ :    (LYS14)  (ASN115)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus sp. [TaxId: 161544]
 d2b4qa_ :    (ARG10)  (THR118)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d3t4xa_ :     (LYS8)  (ILE114)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d4o0la_ :    (LYS29)  (ASN138)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Rhodotorula mucilaginosa [TaxId: 5537]
 d3afna_ :     (ARG9)  (VAL113)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sphingomonas sp. [TaxId: 90322]
 d3op4b_ :    (LYS10)  (GLU112)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 243277]
 d1hdca_ :     (LYS7)  (ASN111)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |3-alpha,20-beta-hydroxysteroid dehydrogenase |Streptomyces hydrogenans [TaxId: 1905]
 d4nbua_ :    (LYS14)  (ASN115)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus sp. [TaxId: 161544]
 d3s55d_ :     (LYS8)  (VAL123)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
 d4onea_ :     (PRO6)  (VAL112)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella melitensis [TaxId: 224914]
 d3op4a_ :    (LYS10)  (GLU112)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 243277]
 d4dc1b_ :     (GLU7)  (THR116)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Streptomyces coelicolor [TaxId: 1902]
 d3rroa_ :    (LYS10)  (GLU112)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 243277]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2