Protein Concepts Dictionary

Tableau information

Concept source:  d1aeca_  amino acid (a.a.) range (TYR107)(PRO215)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEHEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (TYR107)  (PRO117) E1
	  (GLU121)  (GLN131) H2
	  (GLN131)  (GLY141) E3
	  (GLY141)  (TYR147) H4
	  (HIS162)  (GLY168) E5
	  (GLY168)  (GLY173) E6
	  (ASP176)  (LYS181) E7
	  (TYR193)  (LEU197) E8
	  (THR210)  (PRO215) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      161.4°   H2                                                      
E3      -62.7° -127.7°   E3                                               
H4      143.4°  -19.3° -124.7°   H4                                        
E5       93.1°  -68.7°  135.2°   55.4°   E5                                 
E6      -49.8° -117.4°   63.3°   98.4°   72.3°   E6                          
E7     -148.4°   50.0°  -92.3°  -66.1°  118.4°  137.6°   E7                   
E8       16.9° -149.3°   79.4°  136.7°  -81.8°  -57.6°  156.1°   E8            
E9      152.2°   25.0°  144.3°  -40.3°  -69.9° -135.9°   52.8° -135.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1s4vb_ :   (ASP111)  (SER221)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Vignain (bean endopeptidase) |Castor bean (Ricinus communis) [TaxId: 3988]
 d3hhia_ :   (TYR235)  (LEU335)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d1mega_ :   (GLY109)  (PRO213)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Caricain (protease omega) |Papaya (Carica papaya) [TaxId: 3649]
 d3mora_ :   (TYR235)  (ALA336)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d3hhib_ :   (THR233)  (ILE333)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d3p5wa_ :   (TYR107)  (TYR219)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Actinidia arguta [TaxId: 64478]
 d1pcia_ :   (GLY102)  (PRO213)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Caricain (protease omega) |Papaya (Carica papaya) [TaxId: 3649]
 d1by8a_ :   (ARG207)  (MET314)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
 d3iv2a_ :   (VAL106)  (VAL220)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1gece_ :   (GLY109)  (PRO213)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Glycyl endopeptidase |Papaya (Carica papaya) [TaxId: 3649]
 d1s4va_ :   (ASP111)  (SER221)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Vignain (bean endopeptidase) |Castor bean (Ricinus communis) [TaxId: 3988]
 d1aeca_ :   (TYR107)  (PRO215)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Actinidin |Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]
 d1khpa_ :   (ALA104)  (PRO209)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Papain |Papaya (Carica papaya) [TaxId: 3649]
 d1bp4a_ :   (ALA104)  (PRO209)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Papain |Papaya (Carica papaya) [TaxId: 3649]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.3