Protein Concepts Dictionary

Tableau information

Concept source:  d3i12b1  amino acid (a.a.) range (LEU4)(MET139)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LEU4)   (PHE10) E1
	   (HIS17)   (ALA30) H2
	   (ASP37)   (ILE43) E3
	   (GLY47)   (VAL51) E4
	   (ASP63)   (ILE67) H5
	  (ASP100)  (VAL106) E6
	  (GLY108)  (ASP113) H7
	  (GLY114)  (ASN124) H8
	  (LEU133)  (MET139) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2     -156.9°   H2                                                      
E3      -22.9° -175.1°   E3                                               
E4      146.8°  -21.6°  153.5°   E4                                        
H5      -95.6°  106.6°  -72.7°  102.2°   H5                                 
E6      -17.6°  141.6°  -39.5°  140.5° -111.7°   E6                          
H7     -140.6°   57.4°  125.8°  -72.5°   68.3° -138.6°   H7                   
H8      150.7°  -48.9°  129.5°  -45.8°   58.4°  168.4°  -46.7°   H8            
H9      -25.7°  133.3°  -47.8°  133.8° -120.0°   -8.4°  138.2° -174.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2fb9a1 :     (MET4)  (MET117)   [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Thermus caldophilus [TaxId: 272]
 d3q1ka1 :     (LEU4)  (MSE139)   [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
 d3i12a1 :     (LEU4)  (MET139)   [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
 d3i12b1 :     (LEU4)  (MET139)   [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
 d3q1kd1 :     (LEU4)  (MSE139)   [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.30