Tableau information
Concept source: d1ge8a1 amino acid (a.a.) range (PHE3)(LYS84)
nSSEs in this Concept: 9
String of secondary struct.elems. (SSEs) defining this concept: EHEEEHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE3) (GLU8) E1
(ALA10) (SER21) H2
(ALA27) (THR32) E3
(GLY35) (ALA40) E4
(LEU48) (PRO54) E5
(PRO54) (SER59) H6
(SER59) (GLU65) E7
(GLU67) (ASN72) E8
(ASN72) (LYS84) H9
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 109.5° H2
E3 102.3° 130.1° E3
E4 -93.3° -23.9° 154.0° E4
E5 86.3° -161.3° -32.7° 172.3° E5
H6 61.5° -137.9° -91.0° 114.9° -58.3° H6
E7 -169.1° -59.7° -87.2° 75.9° -104.6° 124.3° E7
E8 -60.0° -68.4° 160.0° -44.6° 129.9° 72.8° 111.3° E8
H9 -44.6° -153.9° 69.6° -133.7° 43.6° 36.6° 146.0° 90.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ge8a1 : (PHE3) (LYS84) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Pyrococcus furiosus [TaxId: 2261]
d1iz4a1 : (GLU4) (LEU80) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Pyrococcus furiosus [TaxId: 2261]
d4l60a1 : (MET1) (LEU79) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3lx2a1 : (PHE3) (LYS81) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 311400]
d3aixa1 : (MET1) (LEU78) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1isqa1 : (PHE3) (LYS81) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Pyrococcus furiosus [TaxId: 2261]
d1plqa1 : (MET1) (ASN83) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3lx1a1 : (PRO2) (GLY83) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 311400]
d3a2fb1 : (PHE3) (GLY83) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Pyrococcus furiosus [TaxId: 2261]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.131