Protein Concepts Dictionary

Tableau information

Concept source:  d4dz8b1  amino acid (a.a.) range (SER239)(LYS338)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER239)  (PRO244) E1
	  (LYS246)  (MET252) H2
	  (SER254)  (ASP265) E3
	  (PRO271)  (VAL279) E4
	  (ASN286)  (TYR296) E5
	  (SER298)  (LEU309) E6
	  (LEU309)  (ASN315) H7
	  (TYR319)  (ASN325) E8
	  (ILE332)  (LYS338) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      -43.6°   H2                                                      
E3      168.0° -143.1°   E3                                               
E4      -36.1°  -43.3°  136.9°   E4                                        
E5      128.8°  163.7°  -48.1°  143.3°   E5                                 
E6      -29.0°  -23.7°  150.3°  -20.9°  156.4°   E6                          
H7     -101.5° -115.4°   67.0°   75.9°  -78.7°   96.5°   H7                   
E8      158.7°  127.9°  -32.4°  158.4°  -52.3°  150.6°  -99.4°   E8            
E9      -17.9°  -60.6°  151.0°  -39.4°  114.5°  -41.9°  -88.3°  162.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1e4ka1 :   (SER239)  (SER337)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d3h9ya1 :   (VAL336)  (THR434)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1hzhh3 :   (SER252)  (LYS358)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d1adqa1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d4gt7a1 :   (SER337)  (LYS435)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2gj7a1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d4byha1 :   (SER239)  (LYS338)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4jvwa_ :   (ALA453)  (LYS554)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3wn5b1 :   (MET239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d1mcoh3 :   (GLY221)  (GLN327)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d4dz8b1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d1t83a1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d3dj9a_ :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d3zo0a1 :   (GLY237)  (LYS338)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2g2ra2 :   (THR114)  (ASN212)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4q74a1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d3wn5a1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d4gt7c1 :   (SER337)  (LYS435)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2rgsa1 :   (GLY237)  (LYS338)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4ezma1 :   (GLY335)  (LYS435)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4bm7a1 :   (GLY237)  (LYS338)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ejol2 :  (ALA2113) (ARG2215)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain kappa constant domain, CL-kappa |Mouse (Mus musculus) [TaxId: 10090]
 d3wn5a2 :   (GLN342)  (SER442)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
 d3wjja1 :   (SER239)  (LYS338)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1dn2a1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]
 d1i1ac1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1cf8l2 :   (THR114)  (ARG211)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain kappa constant domain, CL-kappa |Mouse (Mus musculus) [TaxId: 10090]
 d1l6xa1 :   (SER239)  (LYS338)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1