Protein Concepts Dictionary

Tableau information

Concept source:  d4ky6a_  amino acid (a.a.) range (THR33)(LYS136)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEHEEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR33)   (LEU38) E1
	   (LEU38)   (PRO42) E2
	   (TYR54)   (ALA69) H3
	   (LYS71)   (ASP77) E4
	   (GLY86)   (ASP95) E5
	   (MET98)  (GLY107) H6
	  (ALA112)  (LYS116) E7
	  (LYS116)  (HIS121) H8
	  (LEU125)  (LYS136) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      108.7°   E2                                                      
H3      109.2° -125.0°   H3                                               
E4       61.7° -117.9°  114.8°   E4                                        
E5      -72.0°   91.9°   64.5°  130.5°   E5                                 
H6      -56.3°   52.5°  143.7°  -88.7°   79.2°   H6                          
E7      -83.1°  157.4°  -65.0°   50.0° -110.3° -134.0°   E7                   
H8      -79.0°  -79.2°   70.6°  140.2°   13.0°  -73.7° -122.7°   H8            
H9      -76.1°   35.1°  128.5° -112.3°   69.6°  -24.6° -158.1°   60.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3nqta_ :    (THR33)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d1tr5a_ :    (THR33)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d4ky6a_ :    (THR33)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d3tp5a_ :    (VAL33)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d3e5sa_ :    (THR33)  (LYS134)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1nuca_ :    (THR33)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d4odga_ :    (THR33)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3d4da_ :    (THR33)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1syba_ :    (THR33)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3owfa_ :    (MET32)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.40