Protein Concepts Dictionary

Tableau information

Concept source:  d4mzpc_  amino acid (a.a.) range (GLY5)(GLY111)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEHEEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY5)    (LEU9) E1
	   (PRO25)   (ASN31) E2
	   (ASN31)   (TYR37) H3
	   (PRO39)   (GLY48) E4
	   (THR57)   (GLU62) E5
	   (ASP71)   (GLU77) E6
	   (GLU77)   (ASP83) E7
	   (GLU89)   (SER95) E8
	   (SER95)  (GLY111) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      140.3°   E2                                                      
H3       40.2°  108.2°   H3                                               
E4      -77.0°  139.3° -112.5°   E4                                        
E5      -74.9°  126.2°  -72.9°  -68.2°   E5                                 
E6      105.2°  -43.6°   95.5°  129.6°  162.1°   E6                          
E7       72.7°  -77.9°   32.7°  141.3°   81.0°  -82.0°   E7                   
E8      156.7°  -60.0° -161.9°   80.5°  102.2°  -84.6° -130.2°   E8            
H9       85.1°  -75.9°   98.3°   97.9° -157.6°  -34.9° -102.8°  -92.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4hkea_ :     (GLY6)  (GLY112)   [view usage] : b.34.6.2 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Kid/PemK |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d4mzpb_ :     (GLY5)  (GLY111)   [view usage] : b.34.6.2 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Kid/PemK |automated matches |Staphylococcus aureus [TaxId: 158879]
 d4mzma_ :     (GLY5)  (GLY111)   [view usage] : b.34.6.2 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Kid/PemK |automated matches |Staphylococcus aureus [TaxId: 158879]
 d4mzpa_ :     (GLY5)  (GLY111)   [view usage] : b.34.6.2 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Kid/PemK |automated matches |Staphylococcus aureus [TaxId: 158879]
 d4mzpc_ :     (GLY5)  (GLY111)   [view usage] : b.34.6.2 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Kid/PemK |automated matches |Staphylococcus aureus [TaxId: 158879]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.34