Protein Concepts Dictionary

Tableau information

Concept source:  d1wr5a_  amino acid (a.a.) range (ALA1)(SER107)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ALA1)    (ASP7) E1
	    (ASP7)   (LYS13) E2
	   (GLN16)   (HIS22) E3
	   (LYS29)   (HIS35) H4
	   (THR48)   (HIS52) H5
	   (GLY64)   (HIS70) H6
	   (SER78)   (GLY88) H7
	   (ASP90)   (GLU96) H8
	  (SER103)  (SER107) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2       85.3°   E2                                                      
E3     -126.7°  147.5°   E3                                               
H4       80.0°   16.6° -151.8°   H4                                        
H5      -79.0°  -71.7°  106.0°   86.3°   H5                                 
H6      -87.3° -141.2°   49.5°  154.5°   69.5°   H6                          
H7      -75.0° -127.8°   65.6°  138.9°   57.4°  -16.2°   H7                   
H8       97.6°  -63.3° -111.2°  -49.4° -135.0°  155.5°  164.9°   H8            
H9       61.9°  -70.3°  126.1°  -53.9° -126.5°  136.4° -132.2°   36.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1j0pa_ :     (ALA1)  (SER107)   [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]
 d1wada_ :     (VAL1)  (PRO111)   [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio gigas [TaxId: 879]
 d2ewka_ :     (ALA1)  (SER107)   [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]
 d1wr5a_ :     (ALA1)  (SER107)   [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]
 d2z47a_ :     (ALA1)  (SER107)   [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.138