Tableau information
Concept source: d4qaga_ amino acid (a.a.) range (ALA437)(VAL552)
nSSEs in this Concept: 9
String of secondary struct.elems. (SSEs) defining this concept: EEEHEHHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA437) (ASN447) E1
(LYS451) (THR459) E2
(GLY462) (PRO468) E3
(THR473) (SER489) H4
(VAL493) (ASP498) E5
(SER499) (GLN509) H6
(GLU516) (LYS528) H7
(GLU529) (TRP535) E8
(ILE542) (VAL552) H9
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.7° E2
E3 -24.5° 169.8° E3
H4 153.8° -33.3° 138.9° H4
E5 -35.2° 133.4° -55.9° 162.7° E5
H6 128.9° -64.9° 105.4° -55.0° -138.1° H6
H7 174.6° -9.2° 160.6° 26.9° -141.7° -56.5° H7
E8 -49.0° 118.5° -71.1° 147.3° -15.7° -143.7° -127.2° E8
H9 -39.3° 144.4° -35.0° 114.6° -72.7° 115.0° 141.1° -83.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3isnc2 : (ALA437) (LEU551) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d2rf2a3 : (GLU438) (ALA554) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Hiv-1 m:b_hxb2r [TaxId: 11706]
d3u3ga_ : (ASN2) (LEU139) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |uncultured organism [TaxId: 155900]
d3meca2 : (ALA437) (VAL552) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Hiv-1 m:b_hxb2r [TaxId: 11706]
d1hnia1 : (ALA437) (ALA554) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d3lp3a_ : (ALA437) (VAL552) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1hmva1 : (GLU438) (SER553) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d4dg1a2 : (ALA437) (ASP549) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Human immunodeficiency virus type 1 [TaxId: 11678]
d2ykma2 : (ALA437) (ILE556) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d1mu2a1 : (ALA436) (ILE555) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 2 [TaxId: 11709]
d1eeta1 : (ALA437) (ALA554) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d4qaga_ : (ALA437) (VAL552) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d3e01a2 : (GLU438) (ALA554) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Human immunodeficiency virus type 1 [TaxId: 11706]
d2wona2 : (ALA437) (ALA554) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1jlaa1 : (GLU438) (SER553) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1bqna1 : (ALA437) (SER553) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1jkha1 : (ALA437) (VAL552) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d2opra2 : (GLU438) (VAL548) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Hiv-1 m:b_hxb2r [TaxId: 11706]
d3k2pa_ : (ALA437) (SER553) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1hysa1 : (ALA437) (LEU551) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d2vg5a2 : (ALA437) (ALA554) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d3di6a3 : (GLU438) (ALA554) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Human immunodeficiency virus type 1 [TaxId: 11706]
d4puoa2 : (ALA437) (ALA554) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Human immunodeficiency virus type 1 [TaxId: 11678]
d1s6pa1 : (ALA437) (VAL552) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1rtda1 : (GLU438) (SER553) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1bqma1 : (ALA437) (SER553) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |HIV RNase H (Domain of reverse transcriptase) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1rcha_ : (GLN4) (MET142) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |RNase H (RNase HI) |Escherichia coli [TaxId: 562]
d1bisb_ : (ILE60) (VAL165) [view usage] : c.55.3.2 |Ribonuclease H-like motif |Ribonuclease H-like |Retroviral integrase, catalytic domain |Retroviral integrase, catalytic domain |Human immunodeficiency virus type 1 [TaxId: 11676]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.55