Protein Concepts Dictionary

Tableau information

Concept source:  d1va4a_  amino acid (a.a.) range (SER1)(GLY108)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER1)    (LYS6) E1
	    (GLY8)   (GLY17) E2
	   (LYS20)   (HIS26) E3
	   (ASP31)   (GLY46) H4
	   (TYR47)   (ASP53) E5
	   (PRO63)   (TYR69) H6
	   (TYR69)   (ASP84) H7
	   (THR89)   (SER94) E8
	   (SER94)  (GLY108) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      142.9°   E2                                                      
E3      -69.9°  131.9°   E3                                               
H4      120.9°  -32.1°  163.6°   H4                                        
E5      -56.6°  155.0°  -25.1° -171.0°   E5                                 
H6       90.0°  -55.7° -111.5°   59.2° -127.6°   H6                          
H7      125.1°  -53.2°  151.5°  -34.6°  137.9°  -93.7°   H7                   
E8      -77.7°  120.6°  -11.5°  152.0°  -36.6° -103.7°  151.7°   E8            
H9       56.4° -100.1°  125.1°  -68.9°  104.9°   80.9°  -70.2° -134.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1a8qa_ :     (PRO1)  (ARG106)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |Bromoperoxidase A1 |Streptomyces aureofaciens [TaxId: 1894]
 d1va4a_ :     (SER1)  (GLY108)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |Arylesterase |Pseudomonas fluorescens [TaxId: 294]
 d1xfda2 :   (PRO592)  (ILE721)   [view usage] : c.69.1.24 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |DPP6 catalytic domain-like |Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d3t4ua_ :     (SER1)  (GLY108)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |automated matches |Pseudomonas fluorescens [TaxId: 294]
 d1a8sa_ :     (THR1)  (ARG106)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |Chloroperoxidase F |Pseudomonas fluorescens [TaxId: 294]
 d3hi4a_ :     (SER1)  (ARG106)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |automated matches |Pseudomonas fluorescens [TaxId: 294]
 d3heaa_ :     (SER1)  (ARG106)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |automated matches |Pseudomonas fluorescens [TaxId: 294]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69