Protein Concepts Dictionary

Tableau information

Concept source:  d2pkyx_  amino acid (a.a.) range (SER21)(ASP124)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEHEEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER21)   (ASP27) E1
	   (GLY33)   (GLY42) E2
	   (GLU47)   (GLU56) E3
	   (TYR63)   (GLY74) H4
	   (ALA75)   (ASP81) E5
	   (ASP89)   (ASP93) E6
	   (ASP93)   (THR98) H7
	  (HIS102)  (ASP114) H8
	  (THR119)  (ASP124) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      140.6°   E2                                                      
E3      -82.1°  128.4°   E3                                               
H4       95.6°  -52.6°  176.6°   H4                                        
E5      -62.8°  152.7°  -24.9° -154.6°   E5                                 
E6       54.6° -136.1°  -34.7°  142.1°  -34.6°   E6                          
H7       87.6°  -53.0° -139.8°   37.3° -143.5°  111.0°   H7                   
H8      104.6°  -56.5°  159.9°  -23.3°  144.3°  159.0°   60.2°   H8            
E9      -85.0°  123.7°   -5.3°  173.0°  -30.0°  -34.9° -135.9°  162.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4x00b_ :    (TYR14)  (TRP111)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d1beea_ :    (SER21)  (ASP124)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Xanthobacter autotrophicus [TaxId: 280]
 d2pkyx_ :    (SER21)  (ASP124)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Xanthobacter autotrophicus [TaxId: 280]
 d1be0a_ :    (SER21)  (ASP124)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Xanthobacter autotrophicus [TaxId: 280]
 d1hdea_ :    (SER21)  (ASP124)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Xanthobacter autotrophicus [TaxId: 280]
 d2xt0a_ :    (ALA20)  (ASP123)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Plesiocystis pacifica [TaxId: 191768]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69