Protein Concepts Dictionary

Tableau information

Concept source:  d2abba1  amino acid (a.a.) range (THR7)(ARG106)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEHEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR7)   (GLY12) E1
	   (VAL14)   (ASN18) E2
	   (ALA23)   (LEU28) E3
	   (PRO39)   (ALA49) H4
	   (GLY52)   (SER56) E5
	   (GLU57)   (SER62) E6
	   (ALA71)   (HIS75) E7
	   (SER76)   (ASP94) H8
	   (GLY95)  (ARG106) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      157.8°   E2                                                      
E3      -69.2°  101.7°   E3                                               
H4     -128.0°   62.1°  162.8°   H4                                        
E5       48.6° -114.8°  -27.5°  162.2°   E5                                 
E6       -6.5° -155.3°  -62.7° -134.5°   43.0°   E6                          
E7      -40.7°  159.9°   95.7°  -99.5°  -85.3°  -44.3°   E7                   
H8     -147.0°   51.8°  138.1°  -27.2°  163.8° -152.1° -108.2°   H8            
E9       55.5° -102.3°  -57.9°  128.0°  -34.2°  -53.6°  -95.5°  147.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3p82a_ :     (THR7)  (ARG106)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Pentaerythritol tetranirate reductase |Enterobacter cloacae [TaxId: 550]
 d2hsab_ :    (SER14)  (LEU107)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Solanum lycopersicum [TaxId: 4081]
 d4gbua_ :    (LYS18)  (LEU115)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
 d3txza_ :    (LYS18)  (LEU115)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
 d3atyb_ :     (ARG9)  (ALA107)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
 d2hsaa_ :    (SER14)  (LEU107)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Solanum lycopersicum [TaxId: 4081]
 d3atya_ :     (ARG9)  (LEU104)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
 d3gkab_ :    (ASP14)  (ARG112)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
 d3rnda_ :    (LYS18)  (LEU115)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
 d3p8ja_ :     (THR7)  (ARG106)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Pentaerythritol tetranirate reductase |Enterobacter cloacae [TaxId: 550]
 d4ab4a_ :     (ASP6)  (ARG104)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
 d3p62a_ :     (THR7)  (ARG106)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Pentaerythritol tetranirate reductase |Enterobacter cloacae [TaxId: 550]
 d3atzc_ :     (ARG9)  (LEU104)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
 d3p84a_ :     (THR7)  (ARG106)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Pentaerythritol tetranirate reductase |Enterobacter cloacae [TaxId: 550]
 d4gwea_ :    (LYS18)  (LEU115)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
 d3atzd_ :     (ARG9)  (LEU104)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
 d1gwja_ :    (THR13)  (ARG110)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Morphinone reductase |Pseudomonas putida [TaxId: 303]
 d1oyaa_ :    (LYS18)  (LEU115)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
 d2goua_ :     (GLN7)  (LEU101)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
 d3gkaa_ :    (ASP14)  (ARG112)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
 d1bwla_ :    (LYS18)  (LEU115)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Yeast (Candida albicans) [TaxId: 5476]
 d1bwka_ :    (LYS18)  (LEU115)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Yeast (Candida albicans) [TaxId: 5476]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1