Protein Concepts Dictionary

Tableau information

Concept source:  d4hn1a_  amino acid (a.a.) range (THR107)(LEU197)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR107)  (THR112) E1
	  (LEU115)  (SER121) E2
	  (ALA126)  (LEU131) E3
	  (ARG140)  (ASN145) E4
	  (ASN145)  (GLY152) H5
	  (ASP158)  (SER164) E6
	  (SER164)  (ALA170) H7
	  (THR172)  (LEU179) H8
	  (TYR185)  (LEU197) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2     -150.2°   E2                                                      
E3      -44.4° -150.2°   E3                                               
E4      120.6°  -58.2°  149.7°   E4                                        
H5       86.7° -110.3°   92.9°   57.3°   H5                                 
E6      -42.4°  121.0°  -45.1° -149.1°  127.5°   E6                          
H7       66.1° -121.6°   87.3°  -63.4°   24.9° -108.5°   H7                   
H8      -22.6°  150.7°  -25.1°  142.7°  -98.5°   29.7°   83.1°   H8            
H9       97.4°  -97.6°   54.9° -138.2° -113.6°   71.6° -127.6°   75.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4hmza_ :   (THR107)  (GLU198)   [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
 d1pm7b_ :   (ARG108)  (GLY197)   [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Mycobacterium tuberculosis [TaxId: 1773]
 d4hn0d_ :   (THR107)  (GLN195)   [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
 d4hn1a_ :   (THR107)  (LEU197)   [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
 d2ixca_ :   (ARG108)  (GLU198)   [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Mycobacterium tuberculosis [TaxId: 1773]
 d1ofna_ :   (ARG110)  (LEU198)   [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD |Amycolatopsis orientalis [TaxId: 31958]
 d4hn1c_ :   (THR107)  (HIS201)   [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
 d4hmzb_ :   (THR107)  (HIS199)   [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
 d4hn1d_ :   (THR107)  (HIS200)   [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
 d4hmzc_ :   (THR107)  (LEU197)   [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
 d1wa4a_ :   (ARG110)  (ALA200)   [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |automated matches |Amycolatopsis orientalis [TaxId: 31958]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82