Protein Concepts Dictionary

Tableau information

Concept source:  d2jifb1  amino acid (a.a.) range (THR190)(PRO271)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR190)  (GLY196) E1
	  (ASP197)  (GLY203) E2
	  (GLY203)  (TRP207) E3
	  (GLY215)  (ASP224) E4
	  (GLY228)  (ILE232) H5
	  (ILE232)  (ASP240) E6
	  (LEU244)  (LEU253) E7
	  (SER258)  (ASN267) E8
	  (ASN267)  (PRO271) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      160.1°   E2                                                      
E3     -136.0°  -60.5°   E3                                               
E4      -84.2°   89.6°  130.1°   E4                                        
H5       70.1° -116.9°  -70.5°  153.4°   H5                                 
E6       83.1°  -91.0°  -80.2°  143.8°  -41.7°   E6                          
E7     -163.1°   36.3°  -28.5°  105.6°  -98.0°  -95.9°   E7                   
E8       43.6° -119.9°  179.5°  -49.8°  109.4°  100.0°  151.8°   E8            
E9      -54.3°  145.6°   87.3° -104.1°   55.5°   95.6° -109.3°  -92.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2jifb1 :   (THR190)  (PRO271)   [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ivha2 :   (LEU149)  (PRO232)   [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Isovaleryl-coa dehydrogenase, NM domains |Human (Homo sapiens) [TaxId: 9606]
 d3pfda1 :   (THR148)  (PRO229)   [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
 d4iv6b1 :   (THR136)  (PRO218)   [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d1jqia2 :   (THR144)  (PRO225)   [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Butyryl-CoA dehydrogenase, NM domains |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1ukwa2 :   (THR169)  (PRO250)   [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Thermus thermophilus [TaxId: 274]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.6