Protein Concepts Dictionary

Tableau information

Concept source:  d1tefa_  amino acid (a.a.) range (VAL1)(ASN99)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (VAL1)    (GLY6) E1
	   (ASP18)   (ALA22) E2
	   (GLU25)   (ASN31) E3
	   (PRO36)   (PHE41) E4
	   (ASP51)   (SER56) H5
	   (GLU60)   (PRO66) E6
	   (CYS69)   (THR75) E7
	   (GLY78)   (CYS84) E8
	   (GLY94)   (ASN99) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2     -157.4°   E2                                                      
E3      -20.0°  143.2°   E3                                               
E4      133.0°  -59.7°  152.9°   E4                                        
H5      -71.5°  104.0°  -53.2°  151.1°   H5                                 
E6      -86.5°   95.4°  -70.4°  131.5°   20.1°   E6                          
E7      138.1°  -56.6°  158.1°    6.6°  144.5° -124.9°   E7                   
E8      -28.6°  130.9°  -13.9°  153.9°  -55.0°  -74.3°  160.5°   E8            
E9      172.9°  -28.9°  165.7°  -41.3°  112.7°   96.4°  -35.8°  158.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1tefa_ :     (VAL1)   (ASN99)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Spinach (Spinacia oleracea) [TaxId: 3562]
 d1pcsa_ :    (ALA-2)   (GLU99)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Synechocystis sp. PCC 6803 [TaxId: 1148]
 d1bypa_ :     (ALA1)   (ASN99)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |White campion (Silene pratensis) [TaxId: 52853]
 d1iuza_ :     (ALA0)   (GLN99)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Ulva pertusa, a sea lettuce [TaxId: 3120]
 d2plta_ :     (ASP0)   (VAL98)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
 d1jxga_ :     (MET0)   (ASN99)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Poplar (Populus nigra), variant italica [TaxId: 3691]
 d7pcya_ :     (ALA0)   (GLN99)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Green alga (Enteromorpha prolifera) [TaxId: 3117]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.6