Protein Concepts Dictionary

Tableau information

Concept source:  d2cczb_  amino acid (a.a.) range (ARG13)(LEU99)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ARG13)   (VAL19) E1
	   (PRO25)   (GLU39) E2
	   (HIS43)   (GLN49) E3
	   (PRO51)   (GLY56) E4
	   (GLY56)   (SER65) H5
	   (ILE72)   (GLY76) E6
	   (PHE77)   (LYS82) E7
	   (LYS89)   (GLU95) E8
	   (GLU95)   (LEU99) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2     -145.4°   E2                                                      
E3       40.1° -172.8°   E3                                               
E4      -29.9°  130.8°  -56.4°   E4                                        
H5     -138.7°   71.2° -106.1° -120.7°   H5                                 
E6       54.4°  -99.5°   81.7°   74.1° -165.3°   E6                          
E7       87.6° -110.6°   62.6°  115.2°  -94.2°   78.1°   E7                   
E8      -67.2°   99.0°  -87.8°  -37.5°   95.0°   97.8°  150.4°   E8            
E9     -131.2°   72.0° -107.3° -107.9°   15.6°  170.3° -108.8°  -79.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1wocc_ :    (ALA14)  (ASP101)   [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1fgua2 :   (LYS324)  (ALA401)   [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
 d1v1qa_ :    (ALA14)   (LEU99)   [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Primosomal replication protein N, PriB |Escherichia coli [TaxId: 562]
 d1woca_ :    (ALA14)   (LEU99)   [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1qvca_ :    (ASP17)  (GLY113)   [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |ssDNA-binding protein |Escherichia coli [TaxId: 562]
 d2ccza_ :    (ALA14)  (ASP101)   [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d2cczb_ :    (ARG13)   (LEU99)   [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3tqyc_ :    (ASP20)  (ASP113)   [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Coxiella burnetii [TaxId: 777]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.40