Protein Concepts Dictionary

Tableau information

Concept source:  d4hz1a_  amino acid (a.a.) range (CYS3)(LEU127)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (CYS3)   (ASP11) E1
	   (ASN18)   (ASP23) E2
	   (LYS27)   (GLY37) E3
	   (MET44)   (THR52) E4
	   (THR52)   (SER66) H5
	   (ILE81)   (SER89) E6
	   (GLU91)   (PHE97) E7
	  (GLU106)  (PHE111) E8
	  (MET121)  (LEU127) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2     -169.7°   E2                                                      
E3      -21.2°  154.2°   E3                                               
E4      139.0°  -48.3°  156.6°   E4                                        
H5      -46.2°  123.5°  -46.0°  143.3°   H5                                 
E6      -38.8°  135.8°  -18.4°  170.8°  -44.8°   E6                          
E7      144.9°  -41.1°  164.6°   -8.8°  138.2° -175.7°   E7                   
E8      -35.6°  135.4°  -24.1°  168.0°  -25.8°  -19.1°  163.9°   E8            
E9      173.6°  -16.0°  163.3°  -34.9°  138.6°  146.7°  -29.4°  150.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ag0a_ :     (CYS4)  (LEU128)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1i53a_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d4koca_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d4hz1a_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3u25a_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1ilsa_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d4koba_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2ft6a_ :     (CYS3)  (LEU123)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1azua_ :    (MET13)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2ftaa_ :     (CYS3)  (LEU124)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1a4aa_ :     (ALA5)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Alcaligenes denitrificans [TaxId: 32002]
 d2ghza_ :     (VAL5)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3fswa_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2xv0a_ :     (CYS3)  (LEU124)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d4ko7a_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2iwea_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2tsaa_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2hx7a_ :     (CYS3)  (LEU126)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1uria_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Alcaligenes denitrificans [TaxId: 32002]
 d1joia_ :     (VAL5)  (VAL127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas fluorescens [TaxId: 294]
 d2idfa_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1rkra_ :     (VAL5)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]
 d1ezla_ :     (ALA3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2hx7b_ :     (CYS3)  (LEU126)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3fpya_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3iboa_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2ftac_ :     (CYS3)  (LEU124)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2aana_ :    (VAL19)  (ASN139)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Chloroflexus aurantiacus [TaxId: 1108]
 d1bexa_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1xb8c_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1xb6a_ :     (CYS3)  (LEU127)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1cc3a_ :     (CYS3)  (LEU129)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.6