Protein Concepts Dictionary

Tableau information

Concept source:  d4bwua_  amino acid (a.a.) range (GLY28)(ALA120)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY28)   (VAL34) E1
	   (LYS38)   (ALA44) E2
	   (GLU54)   (ILE60) E3
	   (GLU62)   (VAL68) E4
	   (GLY72)   (CYS78) E5
	   (HIS81)   (GLY85) H6
	   (MET86)   (GLY93) E7
	   (ASN98)  (THR104) H8
	  (PRO108)  (ALA120) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      152.4°   E2                                                      
E3      -25.3° -176.8°   E3                                               
E4      160.5°   22.9° -160.3°   E4                                        
E5      -14.6°  149.5°  -27.4°  169.6°   E5                                 
H6      113.6°  -64.7°  117.5°  -48.9°  128.0°   H6                          
E7      165.9°  -41.3°  141.2°  -27.3°  162.4°  -65.7°   E7                   
H8      -19.4°  133.9°  -44.2° -142.8°   28.6° -102.5° -168.1°   H8            
H9      137.0°  -66.9°  116.2°  -45.7°  143.5°   55.3°  -30.1° -144.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4paza_ :    (ASP29)  (LYS123)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d6paza_ :    (ASP29)  (LYS123)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d4bwua_ :    (GLY28)  (ALA120)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Thiosphaera pantotropha [TaxId: 82367]
 d2p80d_ :    (ASP29)  (ALA120)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d3ef4a_ :    (GLY29)  (ALA120)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Hyphomicrobium denitrificans [TaxId: 53399]
 d2jkwa_ :    (ASP29)  (GLY123)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Achromobacter cycloclastes [TaxId: 223]
 d1py0a_ :    (ASP29)  (ALA120)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Alcaligenes faecalis, strain s-6 [TaxId: 511]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.6