Protein Concepts Dictionary

Tableau information

Concept source:  d3q1ed_  amino acid (a.a.) range (LEU9)(ARG117)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LEU9)   (ASN15) E1
	   (MET25)   (ARG31) E2
	   (SER37)   (ASP49) E3
	   (GLY51)   (GLY55) E4
	   (VAL66)   (GLU72) E5
	   (GLU72)   (GLY81) H6
	   (TYR88)   (THR94) E7
	  (TYR102)  (LEU108) E8
	  (PHE111)  (ARG117) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      148.3°   E2                                                      
E3      -55.5°  151.9°   E3                                               
E4      164.5°  -38.6°  124.8°   E4                                        
E5      -31.0°  160.4°  -46.0°  135.6°   E5                                 
H6      -36.6°  171.6°  -30.8°  134.3°   15.3°   H6                          
E7      146.7°  -35.4°  117.6°  -48.8°  163.6°  148.3°   E7                   
E8      -14.0°  140.6°  -66.2°  152.4°  -30.6°  -41.5°  154.6°   E8            
E9      152.5°  -47.3°  104.7°  -41.1°  147.1°  133.0°  -20.5°  166.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2royb_ :    (LEU12)  (ASN124)   [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Human (Homo sapiens) [TaxId: 9606]
 d1sn0c_ :    (LEU12)  (VAL125)   [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Gilthead seabream (Sparus aurata) [TaxId: 8175]
 d2h1xa_ :     (LEU9)  (ARG117)   [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d1sn0a_ :    (LEU12)  (ALA120)   [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Gilthead seabream (Sparus aurata) [TaxId: 8175]
 d1sn0d_ :    (LEU12)  (SER123)   [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Gilthead seabream (Sparus aurata) [TaxId: 8175]
 d2h6ua_ :     (LEU9)  (ARG117)   [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d1oo2a_ :    (LEU12)  (SER124)   [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Gilthead seabream (Sparus aurata) [TaxId: 8175]
 d3iwua_ :     (LEU9)  (ARG117)   [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d2g2na_ :    (GLY16)  (ARG112)   [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d2igla_ :    (LEU29)  (ARG135)   [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3q1ed_ :     (LEU9)  (ARG117)   [view usage] : b.3.4.0 |Prealbumin-like |Transthyretin (synonym: prealbumin) |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d1sn0b_ :    (LEU12)  (SER124)   [view usage] : b.3.4.1 |Prealbumin-like |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Transthyretin (synonym: prealbumin) |Gilthead seabream (Sparus aurata) [TaxId: 8175]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.3