Protein Concepts Dictionary

Tableau information

Concept source:  d4nbxb_  amino acid (a.a.) range (ALA42)(SER130)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA42)   (PRO48) E1
	   (GLU51)   (SER59) E2
	   (ARG63)   (ALA68) E3
	   (ARG74)   (ASP80) E4
	   (VAL86)   (SER92) E5
	   (LYS94)  (VAL100) H6
	  (VAL100)  (ALA106) E7
	  (ALA118)  (GLN122) E8
	  (THR124)  (SER130) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      162.1°   E2                                                      
E3      -18.2° -162.3°   E3                                               
E4      134.8°  -53.9°  143.6°   E4                                        
E5      -52.2°  114.0°  -50.5°  159.9°   E5                                 
H6       98.8°  -92.4°  104.9°  -38.7° -149.9°   H6                          
E7      150.2°  -47.7°  137.5°  -43.9°  143.2°   65.8°   E7                   
E8      -50.3°  114.0°  -66.8°  110.9°  -56.5° -100.6°  153.1°   E8            
E9      -59.5°  106.9°  -57.2°  155.8°   -7.3° -156.9°  137.1°  -60.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2p44b_ :    (GLY35)  (SER121)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
 d1uz6e1 :    (TYR34)  (ILE106)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
 d1mlba1 :    (HIS34)  (ILE106)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
 d1qd0a_ :    (GLY33)  (SER128)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Llama (Lama glama) [TaxId: 9844]
 d2a9mh_ :    (SER40)  (SER148)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1qfwm_ :   (SER234)  (LYS307)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
 d2cdea1 :    (ARG34)  (PRO114)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
 d4ei5d1 :    (TYR35)  (GLU115)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4ndma1 :    (HIS35)  (GLU117)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1a4kb1 :    (ASN35)  (SER112)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
 d2p4ab_ :    (GLY35)  (SER121)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
 d1jfqh1 :   (GLY333)  (SER420)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
 d4bele_ :   (THR194)  (SER270)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
 d4ei5h1 :    (TYR35)  (GLU115)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4lhug1 :    (HIS37)  (VAL123)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4j4pd1 :    (GLY52)  (VAL128)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1fl3b1 :    (TYR39)  (ARG113)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
 d3ux9d2 :   (ALA167)  (SER252)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1l7ih1 :    (THR33)  (VAL111)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Engineered (including hybrid species)
 d4iiqa1 :    (GLY31)  (PRO109)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1