Protein Concepts Dictionary

Tableau information

Concept source:  d3t67m_  amino acid (a.a.) range (GLY425)(LYS532)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY425)  (CYS429) E1
	  (GLY435)  (ARG440) E2
	  (GLY445)  (ARG450) E3
	  (PRO453)  (PRO458) E4
	  (HIS462)  (SER466) E5
	  (ILE475)  (PHE480) E6
	  (CYS489)  (SER494) H7
	  (ASN497)  (GLN503) H8
	  (CYS518)  (LYS532) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      149.8°   E2                                                      
E3     -115.5°   91.0°   E3                                               
E4       38.6° -112.5°  153.0°   E4                                        
E5      -23.7°  148.7°   96.8°   56.2°   E5                                 
E6      111.2°  -59.2° -123.1°   82.0°  134.7°   E6                          
H7      -31.4°  177.5°   87.0°  -69.1°   30.4° -123.3°   H7                   
H8       86.0°  -64.8°  130.9°  -56.2°   87.7°  -81.8°  115.6°   H8            
E9      -50.4°  152.5°   65.1°  -88.7°  -35.4°  145.1°   25.0° -120.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1yklb_ :   (GLY425)  (LYS532)   [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Pseudomonas putida [TaxId: 303]
 d1eo2b_ :   (CYS426)  (ARG528)   [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
 d3lktm_ :   (GLY425)  (LYS532)   [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Pseudomonas putida [TaxId: 303]
 d2butb1 :   (ASN422)  (ARG528)   [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
 d3mflm_ :   (GLY425)  (LYS532)   [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Pseudomonas putida [TaxId: 303]
 d3t63m_ :   (GLY425)  (LYS532)   [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Pseudomonas putida [TaxId: 303]
 d3t67m_ :   (GLY425)  (LYS532)   [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Pseudomonas putida [TaxId: 303]
 d3mi1m_ :   (GLY425)  (LYS532)   [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Pseudomonas putida [TaxId: 303]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.3