Protein Concepts Dictionary

Tableau information

Concept source:  d1waaa_  amino acid (a.a.) range (LEU1)(LEU89)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LEU1)    (LYS6) E1
	    (TYR9)   (PHE14) E2
	   (THR18)   (GLU24) E3
	   (HIS31)   (LEU36) E4
	   (GLU48)   (GLY53) E5
	   (HIS56)   (ASN62) E6
	   (GLN64)   (GLU70) H7
	   (VAL71)   (ALA75) E8
	   (ASN77)   (LEU89) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2       46.7°   E2                                                      
E3      134.2°  175.6°   E3                                               
E4      -48.6°  -42.8°  141.5°   E4                                        
E5      114.3°  153.3°  -24.2°  145.5°   E5                                 
E6      -48.5°  -12.5°  171.6°  -31.4°  162.1°   E6                          
H7     -123.2° -164.8°   19.3°  122.5°  -33.8° -153.9°   H7                   
E8      146.1°  145.0°  -31.2°  164.5°  -38.3°  153.0°   50.3°   E8            
E9       28.2°  -20.4°  161.6°  -33.3°  142.1°  -20.3° -145.9°  160.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1waac_ :    (ALA-2)   (LEU89)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1waaf_ :     (LEU1)   (LEU89)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ll9b1 :     (LYS4)   (ILE98)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1waab_ :     (LEU1)   (GLU88)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1e0ob1 :   (ALA153)  (GLU250)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fibroblast growth factor receptor, FGFR |Human (Homo sapiens), FGFR2a [TaxId: 9606]
 d3s97d2 :   (LYS238)  (ALA329)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2enya_ :     (SER6)   (GLU97)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1waaa_ :     (LEU1)   (LEU89)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2dlta_ :     (GLN8)  (GLY102)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1gl4b_ :  (PRO1769) (GLN1857)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Perlecan Ig3 domain |Mouse (Mus musculus) [TaxId: 10090]
 d1cs6a4 :   (GLN300)  (ALA388)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Axonin-1 |Chicken (Gallus gallus) [TaxId: 9031]
 d1ij9a2 :     (LYS2)   (SER90)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Vascular cell adhesion molecule-1 (VCAM-1) |Human (Homo sapiens) [TaxId: 9606]
 d1u2ha_ :    (PRO19)  (GLY112)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1waae_ :     (LEU1)   (VAL86)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1