Protein Concepts Dictionary

Tableau information

Concept source:  d1by3a_  amino acid (a.a.) range (GLU159)(ASN291)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLU159)  (GLY169) E1
	  (SER172)  (ASP182) E2
	  (VAL189)  (GLN205) E3
	  (GLY207)  (PRO223) E4
	  (LYS226)  (PRO239) E5
	  (GLY245)  (LYS249) E6
	  (LYS249)  (GLU254) H7
	  (GLY259)  (ASP265) E8
	  (ASN273)  (ASN291) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      179.5°   E2                                                      
E3        5.1° -174.5°   E3                                               
E4      176.8°   -3.0°  171.9°   E4                                        
E5      -19.2°  161.0°  -23.5°  164.0°   E5                                 
E6       55.1° -124.8°   50.7° -121.8°   74.2°   E6                          
H7       91.7°  -88.4°   90.2°  -86.2°  106.5°  -54.6°   H7                   
E8     -140.1°   40.2°  145.2°  -42.9°  122.4° -157.9° -104.1°   E8            
E9      160.1°  -19.8°  155.8°  -16.8°  178.9° -105.1°  -72.4°  -58.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1by5a_ :   (GLU159)  (ASN291)   [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
 d1fcpa_ :   (GLU159)  (MSE281)   [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
 d1qffa_ :   (GLU159)  (MSE281)   [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
 d2fcpa_ :   (GLU159)  (MET281)   [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
 d1fi1a_ :   (GLU159)  (ASN291)   [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
 d1by3a_ :   (GLU159)  (ASN291)   [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   f.4