Protein Concepts Dictionary

Tableau information

Concept source:  d43c9a_  amino acid (a.a.) range (VAL3)(TYR92)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (VAL3)    (THR7) E1
	    (SER9)   (MET13) E2
	   (GLN17)   (SER26) E3
	   (TYR32)   (PRO40) E4
	   (SER43)   (VAL48) E5
	   (ARG61)   (SER67) E6
	   (THR69)   (ILE75) E7
	   (GLN79)   (ASP85) H8
	   (ASP85)   (TYR92) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2       26.1°   E2                                                      
E3      161.7°  165.5°   E3                                               
E4      -54.6°  -66.5°  127.5°   E4                                        
E5       88.6°   78.0°  -88.8°  142.8°   E5                                 
E6      136.0°  141.4°  -29.5°  144.2°  -65.3°   E6                          
E7      -34.8°  -29.2°  160.5°  -40.5°  106.6°  170.0°   E7                   
H8     -142.8° -168.9°   23.8°  107.0° -106.2°  -40.9° -146.9°   H8            
E9      149.0°  130.3°  -35.5°  154.9°  -60.8°  -36.8°  145.6°   59.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2i25n_ :     (ARG2)   (GLY90)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
 d2z8wc_ :     (ALA1)   (PHE86)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
 d1vesa_ :     (ALA1)   (PRO90)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Novel antigen receptor 12Y-2 |Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
 d3utpe1 :     (VAL4)   (SER95)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2i26p_ :     (ARG2)   (GLY90)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
 d2i26n1 :     (ARG2)   (GLY90)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Novel antigen receptor (against lysozyme) |Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
 d2uv3a_ :     (GLU3)   (LYS96)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3fn0l1 :     (GLU3)   (ARG91)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4jo3l1 :     (ILE2)   (GLN90)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d4hgma_ :     (THR1)   (MET86)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Dogfish (Squalus acanthias) [TaxId: 7797]
 d2jjta_ :     (GLU3)   (LYS96)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2coqa_ :     (ALA1)   (ALA90)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
 d1sq2n_ :     (ARG2)   (GLY84)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Novel antigen receptor (against lysozyme) |Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
 d2i26o_ :     (ARG2)   (GLY90)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
 d1bfvh_ :     (VAL2)   (ARG98)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
 d4kjyb_ :     (GLU3)   (LYS96)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1aj7l1 :     (ILE2)   (TYR91)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
 d4hgkc_ :    (THR20)  (MET105)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Dogfish (Squalus acanthias) [TaxId: 7797]
 d2uv3b_ :     (GLU3)   (LYS96)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1