Protein Concepts Dictionary

Tableau information

Concept source:  d2pvaa_  amino acid (a.a.) range (VAL29)(ASN101)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (VAL29)   (ARG34) E1
	   (TYR36)   (LEU41) E2
	   (VAL46)   (TYR52) E3
	   (TYR52)   (GLY56) E4
	   (GLY56)   (ASP61) E5
	   (SER64)   (TYR68) E6
	   (TYR68)   (LYS74) E7
	   (GLY75)   (THR85) E8
	   (GLY96)  (ASN101) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2     -100.5°   E2                                                      
E3      -97.6°  138.8°   E3                                               
E4      173.3°   74.2°   89.1°   E4                                        
E5       88.8°   63.9° -153.4°  -85.1°   E5                                 
E6     -131.2°  -84.7°   56.0°   53.3°  134.2°   E6                          
E7      -40.7° -134.4°   57.4°  145.9° -121.5° -104.3°   E7                   
E8      120.2°   22.2° -134.5°  -53.8°   58.8°  -79.3°  156.6°   E8            
E9      150.8°   97.2°  -83.8°  -29.8°   78.4°  -73.3°  128.3°  -75.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2pvaa_ :    (VAL29)  (ASN101)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |Penicillin V acylase |Bacillus sphaericus [TaxId: 1421]
 d2z71c_ :    (VAL29)  (ASN101)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
 d2z71a_ :    (ASP26)  (ASN101)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
 d3pvaa_ :    (VAL29)  (ASN101)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |Penicillin V acylase |Bacillus sphaericus [TaxId: 1421]
 d2iwmc_ :    (PRO28)  (ASN104)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.153