Protein Concepts Dictionary

Tableau information

Concept source:  d2eysb1  amino acid (a.a.) range (ASP3)(LEU97)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP3)    (THR7) E1
	    (ARG9)   (ILE13) E2
	   (LYS17)   (MET27) E3
	   (ASP30)   (PRO39) E4
	   (GLU42)   (TYR50) E5
	   (ASN53)   (LYS57) E6
	   (GLU63)   (ILE70) E7
	   (GLU73)   (THR78) E8
	   (SER88)   (LEU97) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2       20.6°   E2                                                      
E3      168.8°  165.0°   E3                                               
E4      -51.8°  -63.4°  130.8°   E4                                        
E5      108.2°   98.6°  -68.2°  159.9°   E5                                 
E6      -65.3°  -65.9°  122.9°  -29.8°  152.8°   E6                          
E7      132.8°  130.7°  -39.2°  155.4°  -34.7°  161.9°   E7                   
E8      -23.6°  -25.2°  165.8°  -38.9°  123.8°  -43.0°  154.9°   E8            
E9      155.8°  139.6°  -25.4°  151.7°  -48.4°  130.9°  -33.0°  156.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3jqwc_ :   (GLY866)  (GLY977)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium histolyticum [TaxId: 1498]
 d3jqwa_ :   (GLY866)  (GLY977)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium histolyticum [TaxId: 1498]
 d3to4d1 :     (LEU3)   (SER95)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2axha1 :     (GLY5)   (ILE97)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1i8lc_ :     (MET3)   (LEU98)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoreceptor CTLA-4 (CD152), N-terminal fragment |Human (Homo sapiens) [TaxId: 9606]
 d1ah1a_ :     (HIS2)   (LEU98)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoreceptor CTLA-4 (CD152), N-terminal fragment |Human (Homo sapiens) [TaxId: 9606]
 d4onhb1 :     (GLY3)   (GLY96)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2atpa_ :     (ALA4)  (ASN107)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD8 |Mouse (Mus musculus) [TaxId: 10090]
 d1bqhi_ :     (ALA4)  (ILE105)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD8 |Mouse (Mus musculus) [TaxId: 10090]
 d2e27h_ :     (VAL2) (TYR1001)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1jnlh1 :     (GLN3)   (ILE98)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
 d3dx9a1 :     (LYS3)  (GLY108)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1fbih1 :     (VAL2)  (TYR100)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
 d2atpc_ :     (ALA4)  (ASN107)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD8 |Mouse (Mus musculus) [TaxId: 10090]
 d3umta1 :     (VAL4)  (ARG103)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2bdnh1 :     (GLU1)   (ALA97)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
 d3c5za1 :     (SER2)   (ASN95)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2axja1 :     (GLY5)   (ARG96)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2pxya_ :     (ASP1)  (TYR100)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.18,     b.1