Tableau information
Concept source: d3mbed1 amino acid (a.a.) range (ALA3)(LEU91)
nSSEs in this Concept: 9
String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA3) (PRO8) E1
(ARG9) (ALA13) E2
(GLY17) (THR26) E3
(ASP37) (THR46) E4
(GLY49) (ILE53) E5
(ILE53) (TYR57) E6
(ASP64) (LYS68) E7
(GLY75) (PRO81) E8
(GLU85) (LEU91) E9
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 24.2° E2
E3 165.2° -167.0° E3
E4 -49.6° -60.0° 131.6° E4
E5 82.1° 71.3° -97.9° 130.4° E5
E6 140.7° 131.8° -36.8° -168.3° -61.1° E6
E7 -75.0° -70.2° 114.7° -37.5° -131.0° 139.4° E7
E8 133.5° 136.8° -36.6° 152.6° -67.8° -20.8° 151.2° E8
E9 -27.4° -24.4° 163.8° -36.5° 95.6° 155.0° -49.2° 159.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2gj6e1 : (GLY3) (SER81) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
d1nezh_ : (PRO5) (LEU89) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD8 |Mouse (Mus musculus) [TaxId: 10090]
d3bikb_ : (SER34) (ILE110) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Programmed cell death protein 1, PD1, extracellular domain |Mouse (Mus musculus) [TaxId: 10090]
d4l8sb1 : (VAL4) (SER80) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3sdcd1 : (GLY1) (THR79) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4iiqb1 : (VAL4) (SER80) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vlme1 : (GLY5) (VAL80) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nsnh1 : (ASP1) (ASN82) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
d3bikc_ : (TRP32) (ILE110) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Programmed cell death protein 1, PD1, extracellular domain |Mouse (Mus musculus) [TaxId: 10090]
d3bp5a_ : (SER1) (ILE77) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Programmed cell death protein 1, PD1, extracellular domain |Mouse (Mus musculus) [TaxId: 10090]
d3hnsl1 : (ASP1) (ASN77) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3c5zb1 : (ALA1) (LEU78) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.1