Protein Concepts Dictionary

Tableau information

Concept source:  d3n42f2  amino acid (a.a.) range (ASP298)(PRO382)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP298)  (VAL303) E1
	  (PRO304)  (HIS308) E2
	  (GLY313)  (ALA321) E3
	  (GLY326)  (SER332) E4
	  (ALA336)  (GLU341) E5
	  (ALA342)  (GLU347) E6
	  (SER350)  (ALA359) E7
	  (ALA361)  (CYS370) E8
	  (THR372)  (PRO382) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
E2      -55.7°   E2                                                      
E3      164.9° -139.3°   E3                                               
E4      -48.4°  -43.1°  137.5°   E4                                        
E5      106.3°  125.5°  -67.4° -154.6°   E5                                 
E6      131.1° -173.2°  -33.9°  139.8°   54.9°   E6                          
E7      -44.1°  -20.7°  148.6°  -23.5°  138.4° -163.2°   E7                   
E8      142.5°  114.5°  -42.3°  151.8°  -45.8°  -60.3°  135.0°   E8            
E9      -12.9°  -64.7°  153.9°  -46.7°  109.6°  122.0°  -49.5°  151.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1rera1 :   (ASP298)  (ASP385)   [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |Fusion glycoprotein E1 |Semliki forest virus [TaxId: 11033]
 d2v33a_ :   (ASP298)  (PRO382)   [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |Fusion glycoprotein E1 |Semliki forest virus [TaxId: 11033]
 d3n41f2 :   (ASP298)  (HIS381)   [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Chikungunya virus [TaxId: 37124]
 d3n40f2 :   (ASP298)  (ASP385)   [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Chikungunya virus [TaxId: 37124]
 d3n42f2 :   (ASP298)  (PRO382)   [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Chikungunya virus [TaxId: 37124]
 d2alaa1 :   (THR300)  (LYS384)   [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Semliki forest virus [TaxId: 11033]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1