Protein Concepts Dictionary

Tableau information

Concept source:  d4ok1a_  amino acid (a.a.) range (SER696)(ILE841)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER696)  (LEU722) H1
	  (GLY724)  (HIS729) H2
	  (HIS729)  (LEU741) H3
	  (LEU741)  (ASN758) H4
	  (ASN771)  (ARG779) H5
	  (TYR781)  (GLN798) H6
	  (THR800)  (ILE816) H7
	  (GLN824)  (ILE841) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2      -94.7°   H2                                               
H3      145.7°  113.1°   H3                                        
H4      104.3° -160.8°  -48.2°   H4                                 
H5      -97.9°   -4.8° -111.3°  157.8°   H5                          
H6       45.8°  136.1° -100.5°  -61.0°  140.3°   H6                   
H7      -93.7°    1.1°  114.2°  161.9°   -5.3°  135.2°   H7            
H8       94.9° -160.0°  -52.7°   17.3° -161.1°  -49.2° -160.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3wffa_ :   (THR761)  (CYS910)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1a28a_ :   (THR710)  (LEU858)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Progesterone receptor |Human (Homo sapiens) [TaxId: 9606]
 d3b0ta_ :   (PRO228)  (CYS369)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Vitamin D nuclear receptor |Human (Homo sapiens) [TaxId: 9606]
 d2i0jc_ :   (SER341)  (GLY494)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Estrogen receptor alpha |Human (Homo sapiens) [TaxId: 9606]
 d3bejb_ :   (SER279)  (GLN408)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3wfga_ :   (THR761)  (CYS910)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2a3ia_ :   (THR761)  (PRO911)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ok1a_ :   (SER696)  (ILE841)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Androgen receptor |Human (Homo sapiens) [TaxId: 9606]
 d3m7ra_ :   (PRO228)  (CYS369)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Vitamin D nuclear receptor |Human (Homo sapiens) [TaxId: 9606]
 d1i37a_ :   (GLN711)  (LEU830)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Androgen receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1m2za_ :   (SER555)  (GLU705)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Glucocorticoid receptor |Human (Homo sapiens) [TaxId: 9606]
 d2hb7a_ :   (PRO228)  (HIS371)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ie9a_ :   (PRO228)  (CYS369)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Vitamin D nuclear receptor |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.123