Protein Concepts Dictionary

Tableau information

Concept source:  d4f0ta_  amino acid (a.a.) range (THR3)(SER174)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR3)   (GLY16) H1
	   (SER21)   (ALA48) H2
	   (VAL52)   (PRO64) H3
	   (GLN78)  (GLY102) H4
	  (THR104)  (TYR110) H5
	  (GLY114)  (ASP123) H6
	  (SER127)  (ASN139) H7
	  (GLY146)  (SER174) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -148.8°   H2                                               
H3      -89.5°   78.2°   H3                                        
H4       63.1° -145.8°  126.3°   H4                                 
H5       80.4°  -68.6°  -58.3°  142.3°   H5                          
H6      121.6°   30.6°  -53.4° -174.6°   43.0°   H6                   
H7     -119.1°   89.7°  131.5°  -56.4°  154.8°  119.2°   H7            
H8       65.2°  -87.9°  -40.1°  126.3°  -28.2°  -57.6° -171.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2uuna_ :     (PRO4)  (LEU161)   [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |automated matches |Leptolyngbya sp. [TaxId: 47254]
 d1phna_ :     (THR3)  (SER174)   [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Phycocyanin alpha subunit |Red alga (Cyanidium caldarium) [TaxId: 2771]
 d2uulc_ :     (PRO4)  (SER162)   [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |automated matches |Phormidium sp. [TaxId: 1199]
 d1gh0a_ :     (PRO4)  (SER162)   [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Phycocyanin alpha subunit |Spirulina platensis [TaxId: 118562]
 d4f0ta_ :     (THR3)  (SER174)   [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |automated matches |Synechocystis sp. [TaxId: 1111708]
 d2uula_ :     (PRO4)  (SER162)   [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |automated matches |Phormidium sp. [TaxId: 1199]
 d1ha7a_ :     (PRO4)  (SER174)   [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Phycocyanin alpha subunit |Spirulina platensis [TaxId: 118562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   a.1