Protein Concepts Dictionary

Tableau information

Concept source:  d4nyva_  amino acid (a.a.) range (LYS1086)(LEU1196)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	 (LYS1086) (GLN1104) H1
	 (SER1108) (PRO1114) H2
	 (ASP1116) (GLY1121) H3
	 (ASP1124) (VAL1129) H4
	 (LEU1135) (THR1144) H5
	 (TRP1151) (ASN1168) H6
	 (ARG1169) (GLU1188) H7
	 (ASP1190) (LEU1196) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -135.4°   H2                                               
H3       -0.7°  135.6°   H3                                        
H4      136.1°  -83.1°  136.3°   H4                                 
H5     -161.6°  -54.6°  161.0°  -49.9°   H5                          
H6      -27.1°  113.6°  -27.7°  134.4°  168.2°   H6                   
H7      137.6°  -84.5°  137.2°  -40.5°  -30.1° -161.6°   H7            
H8      174.0°  -50.0° -174.1°  -38.1°   19.2° -154.5°   38.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3dwya_ :  (MET1095) (GLY1197)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |CREB-binding protein, CBP |Human (Homo sapiens) [TaxId: 9606]
 d3i3jf_ :  (LYS1050) (SER1159)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3p1ca_ :  (LYS1086) (LEU1196)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3p1db_ :  (LYS1086) (LEU1196)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4nyvb_ :  (LYS1086) (LEU1196)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3p1fa_ :  (LYS1086) (GLY1197)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4nr6a_ :  (LYS1086) (LEU1196)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3dwyb_ :  (LYS1086) (LEU1196)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |CREB-binding protein, CBP |Human (Homo sapiens) [TaxId: 9606]
 d3i3ja_ :  (LYS1050) (LEU1160)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4nyva_ :  (LYS1086) (LEU1196)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4qnsa_ :  (GLY1355) (ILE1460)   [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
 d3i3jb_ :  (LYS1050) (LEU1160)   [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.29