Protein Concepts Dictionary

Tableau information

Concept source:  d1y0aa_  amino acid (a.a.) range (SER3)(ARG141)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER3)   (GLY18) H1
	   (GLY22)   (PRO37) H2
	   (PRO37)   (PHE43) H3
	   (SER52)   (HIS72) H4
	   (ASP75)   (SER81) H5
	   (SER81)   (ARG92) H6
	   (ASN97)  (HIS112) H7
	  (THR118)  (ARG141) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2      102.7°   H2                                               
H3      -71.6° -113.5°   H3                                        
H4     -141.6°  115.1°   98.1°   H4                                 
H5       43.8°  -83.7°  -45.7°  143.6°   H5                          
H6       79.0°  -30.3°   88.2° -138.8°  -53.4°   H6                   
H7       63.5°  124.6° -111.5°  -88.3°  106.8°  127.1°   H7            
H8      -95.6°  -75.6°   41.4°  100.1°  -52.6°  -59.5°  152.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3mkba_ :     (THR3)  (SER137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Isurus oxyrinchus [TaxId: 57983]
 d1xzua_ :     (SER3)  (ARG141)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d3dhtb_ :     (ASP5)  (ALA142)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1fhja_ :    (LYS11)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Maned wolf (Chrysocyon brachyurus) [TaxId: 68728]
 d1a00a_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d1fsxa_ :     (SER3)  (SER138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Cow (Bos taurus) [TaxId: 9913]
 d1z8ub_ :     (SER3)  (SER131)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d1y0da_ :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d1y0aa_ :     (SER3)  (ARG141)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d1jeba_ :     (THR3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens), zeta isoform [TaxId: 9606]
 d1y35b_ :     (THR4)  (ALA142)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, beta-chain |Human (Homo sapiens) [TaxId: 9606]
 d3fh9a_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Pteropus giganteus [TaxId: 143291]
 d1spga_ :     (SER3)  (GLU140)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Fish (Leiostomus xanthurus) [TaxId: 59837]
 d3cy5a_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Buffalo (Bubalus bubalis) [TaxId: 89462]
 d1y4vb_ :     (THR4)  (ALA142)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, beta-chain |Human (Homo sapiens) [TaxId: 9606]
 d1gcva_ :     (THR3)  (SER137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Houndshark (Mustelus griseus) [TaxId: 89020]
 d1o1oa_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d1bzza_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d3bcqa_ :     (SER3)  (GLU139)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Brycon cephalus [TaxId: 126311]
 d1o1ia_ :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d3qjba_ :     (SER3)  (SER138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d2ri4a_ :     (SER3)  (SER138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Goat (Capra hircus) [TaxId: 9925]
 d1rvwa_ :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d2zlxc_ :     (ALA4)  (SER138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Horse (Equus caballus) [TaxId: 9796]
 d3dhta_ :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1baba_ :     (SER4)  (LEU137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d1bz1a_ :     (SER4)  (THR138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d4mqha_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d3p5qa_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d1cg5a_ :     (SER3)  (SER138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]
 d1xz5a_ :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d2oifb_ :    (SER11)  (LYS159)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Barley (Hordeum vulgare) [TaxId: 4513]
 d1y83b_ :     (THR4)  (ALA142)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, beta-chain |Human (Homo sapiens) [TaxId: 9606]
 d1xzva_ :     (SER3)  (ARG141)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d4h2la_ :     (SER3)  (ARG141)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Peromyscus maniculatus [TaxId: 10042]
 d1cg5b_ :     (SER4)  (SER137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, beta-chain |Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]
 d1s0ha1 :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Donkey (Equus asinus) [TaxId: 9793]
 d1y09a_ :     (SER3)  (ARG141)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d3fs4a_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Struthio camelus [TaxId: 8801]
 d1o1la2 :   (SER145)  (ARG283)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d2dhba_ :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Horse (Equus caballus) [TaxId: 9796]
 d1iwha_ :     (SER3)  (SER138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Horse (Equus caballus) [TaxId: 9796]
 d1xy0a_ :     (SER3)  (ARG141)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
 d1g0ba_ :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Horse (Equus caballus) [TaxId: 9796]
 d1y0ca_ :     (SER3)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   a.1