Protein Concepts Dictionary

Tableau information

Concept source:  d2gmyd_  amino acid (a.a.) range (ASN6)(ALA113)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASN6)   (SER11) H1
	   (GLU13)   (SER27) H2
	   (HIS32)   (ILE38) H3
	   (LEU40)   (ASN46) H4
	   (ALA49)   (GLY63) H5
	   (SER65)   (VAL74) H6
	   (THR82)   (ILE98) H7
	  (PRO104)  (ALA113) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -112.9°   H2                                               
H3       99.5°  135.5°   H3                                        
H4       99.0°  135.8°   -0.5°   H4                                 
H5     -103.7°  -32.0° -156.8° -157.2°   H5                          
H6       77.9°  119.2°  -38.4°  -38.1°  150.0°   H6                   
H7       61.1°  156.3°  -38.7°  -38.3°  163.6°  -38.7°   H7            
H8      -89.2°   52.5°  161.1°  161.4°   21.3° -160.2° -143.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2o4da1 :     (GLU6)  (ARG112)   [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein PA0269 |Pseudomonas aeruginosa [TaxId: 287]
 d2gmyb_ :     (ASN6)  (ALA113)   [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein Atu0492 |Agrobacterium tumefaciens [TaxId: 358]
 d2gmyc_ :     (ASN6)  (ALA113)   [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein Atu0492 |Agrobacterium tumefaciens [TaxId: 358]
 d2gmyd_ :     (ASN6)  (ALA113)   [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein Atu0492 |Agrobacterium tumefaciens [TaxId: 358]
 d2gmya1 :     (ASN6)  (ARG112)   [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein Atu0492 |Agrobacterium tumefaciens [TaxId: 358]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.152