Protein Concepts Dictionary

Tableau information

Concept source:  d2qyja1  amino acid (a.a.) range (LEU14)(GLY136)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU14)   (GLY25) H1
	   (GLN26)   (GLY37) H2
	   (THR49)   (GLU57) H3
	   (LEU60)   (GLY70) H4
	   (PRO83)   (GLY91) H5
	   (LEU93)  (GLY103) H6
	  (THR115)  (GLY124) H7
	  (LEU126)  (GLY136) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -154.5°   H2                                               
H3      -14.6° -167.7°   H3                                        
H4     -141.1°  -14.7° -155.6°   H4                                 
H5      -19.9° -173.1°   -5.7° -160.9°   H5                          
H6      132.9°  -22.8° -147.4°   -8.3° -152.7°   H6                   
H7      -35.9°  168.4°  -21.5° -176.9°  -16.0° -168.7°   H7            
H8      122.3°  -33.2°  136.9°  -18.8° -142.2°  -10.6° -158.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3hg0d_ :    (SER12)  (LEU135)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Artificial gene [TaxId: 32630]
 d4a63d1 :   (PRO926) (GLU1052)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ympa_ :   (THR120)  (ASP237)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1ycsb1 :   (LEU328)  (GLU453)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |53BP2 |Human (Homo sapiens) [TaxId: 9606]
 d3c5rb_ :   (THR430)  (LEU543)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1bi7b_ :    (ALA13)  (ALA134)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |Cell cycle inhibitor p16ink4A |Human (Homo sapiens) [TaxId: 9606]
 d1d9sa_ :     (SER6)  (ALA127)   [view usage] : i.11.1.1 |Computational models partly based on experimental data |Computational models partly based on experimental data |Computational models partly based on experimental data |Tumor suppressor p15(ink4b) |Mouse (Mus musculus) [TaxId: 10090]
 d2fo1e1 :  (THR1165) (ARG1297)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |Lin-12 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d4a63h1 :   (LEU927) (GLU1052)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1n0ra_ :     (PRO5)  (ALA123)   [view usage] : k.37.1.1 |Artificial ankyrin repeat proteins |Artificial ankyrin repeat proteins |Artificial ankyrin repeat proteins |4ank |Synthetic
 d4a63b1 :   (PRO926) (GLU1052)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3c5ra_ :   (LEU431)  (LEU543)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3b7bb_ :   (PRO845)  (SER967)   [view usage] : d.211.1.0 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1bi8b_ :     (ARG7)  (LEU126)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |Cell cycle inhibitor p19ink4D |Human (Homo sapiens) [TaxId: 9606]
 d1s70b_ :    (ASP39)  (GLY163)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |Myosin phosphatase targeting subunit 1, MYPT1 |Chicken (Gallus gallus) [TaxId: 9031]
 d4tuma_ :   (SER220)  (ALA340)   [view usage] : d.211.1.0 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1dcqa1 :   (THR371)  (GLY507)   [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |Pyk2-associated protein beta |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.211,    k.37,    i.11