Protein Concepts Dictionary

Tableau information

Concept source:  d3zyqa1  amino acid (a.a.) range (THR7)(GLY139)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR7)   (SER17) H1
	   (ASP24)   (GLY38) H2
	   (LYS43)   (ASP55) H3
	   (PRO58)   (CYS75) H4
	   (GLN77)   (VAL83) H5
	   (LYS86)   (ARG98) H6
	  (VAL102)  (PHE119) H7
	  (GLU122)  (GLY139) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -148.1°   H2                                               
H3      -25.7° -148.6°   H3                                        
H4      126.9°  -43.2° -152.1°   H4                                 
H5      -61.0°  103.4°  -45.3° -134.5°   H5                          
H6      -26.3°  160.0°   11.8° -151.0°   56.6°   H6                   
H7      125.6°  -36.2° -147.9°   12.5° -122.0° -151.8°   H7            
H8      -20.1°  141.9°  -11.4° -142.2°   42.4°  -21.0° -136.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2bf0x_ :     (ILE8)  (LYS137)   [view usage] : a.118.9.4 |alpha-alpha superhelix |ENTH/VHS domain |RPR domain (SMART 00582 ) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1elka_ :    (SER11)  (LYS147)   [view usage] : a.118.9.2 |alpha-alpha superhelix |ENTH/VHS domain |VHS domain |Tom1 protein |Human (Homo sapiens) [TaxId: 9606]
 d3ldza_ :    (ASP10)  (GLY139)   [view usage] : a.118.9.0 |alpha-alpha superhelix |ENTH/VHS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1dvpa1 :     (SER5)  (GLY137)   [view usage] : a.118.9.2 |alpha-alpha superhelix |ENTH/VHS domain |VHS domain |Hrs |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d1szaa_ :     (HIS3)  (SER139)   [view usage] : a.118.9.4 |alpha-alpha superhelix |ENTH/VHS domain |RPR domain (SMART 00582 ) |PCF11 protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1x5ba_ :    (ASN25)  (GLY147)   [view usage] : a.118.9.0 |alpha-alpha superhelix |ENTH/VHS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4p8qa4 :   (THR870)  (SER991)   [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1mhqa_ :    (SER25)  (GLY159)   [view usage] : a.118.9.2 |alpha-alpha superhelix |ENTH/VHS domain |VHS domain |ADP-ribosylation factor binding protein Gga2 |Human (Homo sapiens) [TaxId: 9606]
 d1sz9a_ :     (HIS3)  (SER139)   [view usage] : a.118.9.4 |alpha-alpha superhelix |ENTH/VHS domain |RPR domain (SMART 00582 ) |PCF11 protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1py1a_ :     (THR9)  (GLY143)   [view usage] : a.118.9.2 |alpha-alpha superhelix |ENTH/VHS domain |VHS domain |ADP-ribosylation factor binding protein Gga1 |Human (Homo sapiens) [TaxId: 9606]
 d3se6a4 :   (THR801)  (LEU921)   [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1szab_ :     (ASP4)  (SER139)   [view usage] : a.118.9.4 |alpha-alpha superhelix |ENTH/VHS domain |RPR domain (SMART 00582 ) |PCF11 protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3rrua_ :    (THR13)  (LYS149)   [view usage] : a.118.9.0 |alpha-alpha superhelix |ENTH/VHS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1h0aa_ :    (SER18)  (ALA158)   [view usage] : a.118.9.1 |alpha-alpha superhelix |ENTH/VHS domain |ENTH domain |Epsin 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3zyqa1 :     (THR7)  (GLY139)   [view usage] : a.118.9.0 |alpha-alpha superhelix |ENTH/VHS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1sz9c_ :     (HIS3)  (SER139)   [view usage] : a.118.9.4 |alpha-alpha superhelix |ENTH/VHS domain |RPR domain (SMART 00582 ) |PCF11 protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.118