Protein Concepts Dictionary

Tableau information

Concept source:  d3d9db2  amino acid (a.a.) range (GLY262)(GLY430)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY262)  (LEU279) H1
	  (VAL280)  (SER301) H2
	  (HIS313)  (ASP343) H3
	  (TRP348)  (GLY378) H4
	  (GLY378)  (ALA383) H5
	  (PHE388)  (PHE401) H6
	  (GLY404)  (LEU419) H7
	  (ALA426)  (GLY430) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2      -11.4°   H2                                               
H3     -145.4° -156.6°   H3                                        
H4       33.5°   23.8° -160.0°   H4                                 
H5      127.6°  126.9°  -54.6° -108.4°   H5                          
H6     -151.0° -152.6°   40.0° -157.0°  -80.1°   H6                   
H7     -113.5° -120.1°   54.8° -142.2°  109.0°   39.7°   H7            
H8      -86.1°  -97.2°   61.7° -118.2°  100.7°   79.6°   48.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3d9db2 :   (GLY262)  (GLY430)   [view usage] : a.29.3.1 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |Medium chain acyl-CoA dehydrogenase-like, C-terminal domain |automated matches |Fungus (Fusarium oxysporum) [TaxId: 5507]
 d3d9fc2 :   (GLY262)  (GLY430)   [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Fungus (Fusarium oxysporum) [TaxId: 5507]
 d2c0ub1 :   (GLY262)  (GLY430)   [view usage] : a.29.3.1 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |Medium chain acyl-CoA dehydrogenase-like, C-terminal domain |Nitroalkane oxidase |Fungus (Fusarium oxysporum) [TaxId: 5507]
 d3d9dc2 :   (LYS264)  (GLY430)   [view usage] : a.29.3.1 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |Medium chain acyl-CoA dehydrogenase-like, C-terminal domain |automated matches |Fungus (Fusarium oxysporum) [TaxId: 5507]
 d3d9gb2 :   (LEU263)  (GLY430)   [view usage] : a.29.3.1 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |Medium chain acyl-CoA dehydrogenase-like, C-terminal domain |automated matches |Fungus (Fusarium oxysporum) [TaxId: 5507]
 d2reha1 :   (LEU263)  (GLY430)   [view usage] : a.29.3.1 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |Medium chain acyl-CoA dehydrogenase-like, C-terminal domain |automated matches |Fungus (Fusarium oxysporum) [TaxId: 5507]
 d2c0ua1 :   (GLY262)  (GLY430)   [view usage] : a.29.3.1 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |Medium chain acyl-CoA dehydrogenase-like, C-terminal domain |Nitroalkane oxidase |Fungus (Fusarium oxysporum) [TaxId: 5507]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.29