Protein Concepts Dictionary

Tableau information

Concept source:  d1boto1  amino acid (a.a.) range (ALA109)(THR189)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA109)  (GLY119) H1
	  (LEU120)  (GLY129) H2
	  (SER137)  (HIS147) H3
	  (SER151)  (ARG157) H4
	  (GLU159)  (THR164) E5
	  (THR164)  (GLN175) H6
	  (HIS179)  (TYR183) E7
	  (TYR183)  (THR189) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2      107.4°   H2                                               
H3      114.0°  116.0°   H3                                        
H4      -76.6°   37.6°  111.8°   H4                                 
E5      -86.2°  -75.8°  149.4°  -94.6°   E5                          
H6      123.7°   53.2°  -63.4°   57.8°  125.4°   H6                   
E7      -52.6°  -93.9° -150.2°  -92.0°   34.3°  146.2°   E7            
H8       75.4° -176.8°  -63.6° -145.6°  103.0° -126.8°  -86.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4e1ja1 :   (THR130)  (THR211)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d3h45o1 :   (SER110)  (THR190)   [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Enterococcus casseliflavus [TaxId: 37734]
 d3ezwg1 :   (THR108)  (MET190)   [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
 d3g25c1 :   (VAL101)  (THR188)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
 d4e1jc1 :   (THR130)  (LEU212)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d1bwfo1 :   (THR108)  (THR189)   [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
 d1bu6y1 :   (THR108)  (THR189)   [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
 d3g25a1 :   (VAL101)  (LEU189)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
 d2zf5o1 :   (ALA107)  (THR184)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 69014]
 d1boto1 :   (ALA109)  (THR189)   [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
 d3ezwa1 :   (THR108)  (MET190)   [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Escherichia coli [TaxId: 562]
 d1xupo1 :   (ILE112)  (THR190)   [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Enterococcus casseliflavus [TaxId: 37734]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.55