Protein Concepts Dictionary

Tableau information

Concept source:  d2qq3c_  amino acid (a.a.) range (GLY142)(LEU248)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHEHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY142)  (LEU150) H1
	  (PRO153)  (GLY163) H2
	  (SER167)  (GLY175) H3
	  (ASN178)  (SER182) E4
	  (GLU188)  (GLN200) H5
	  (PRO201)  (ALA215) H6
	  (PRO219)  (PHE235) H7
	  (GLU238)  (LEU248) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2      141.7°   H2                                               
H3       62.3° -155.5°   H3                                        
E4      -99.8°   45.9° -156.3°   E4                                 
H5       78.2° -138.8°   24.0°  144.8°   H5                          
H6       93.3°  -87.0°   86.4° -111.5°  103.7°   H6                   
H7      -92.1°   94.0°  -88.7°   75.8°  -69.2°  170.0°   H7            
H8      -21.9°  123.2°  -81.3°   78.7°   92.3° -106.3°  -81.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4olqa_ :   (GLY145)  (ASN239)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Hyphomonas neptunium [TaxId: 228405]
 d4qiia_ :   (GLY194)  (LYS302)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d4qiib_ :   (GLY194)  (LYS302)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3hrxa_ :   (GLY138)  (LYS246)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2ppye_ :   (GLY149)  (LYS257)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
 d3qxza_ :   (LEU141)  (GLY252)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
 d3myba_ :   (CYS142)  (GLU251)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d4qiid_ :   (GLY194)  (LYS302)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d2pbpa_ :   (GLY142)  (LYS250)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
 d2qq3c_ :   (GLY142)  (LEU248)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
 d2vx2a_ :   (CYS183)  (GLN292)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4olqb_ :   (GLY145)  (ASN239)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Hyphomonas neptunium [TaxId: 228405]
 d2qq3i_ :   (GLY142)  (LEU248)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
 d3qxib_ :   (GLY144)  (LYS252)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.14