Protein Concepts Dictionary

Tableau information

Concept source:  d3paga_  amino acid (a.a.) range (THR120)(LEU206)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR120)  (LEU127) H1
	  (PRO131)  (GLY141) H2
	  (LEU142)  (ASN153) H3
	  (THR157)  (THR161) E4
	  (PHE166)  (GLY170) H5
	  (PRO171)  (THR175) E6
	  (THR175)  (ASN189) H7
	  (LYS194)  (LEU206) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -125.9°   H2                                               
H3      -69.9°   96.6°   H3                                        
E4       99.1°  -83.9° -166.9°   E4                                 
H5      -21.2°  107.0°  -58.7°  108.5°   H5                          
E6      -73.7°  114.2°   23.8° -161.6°  -70.8°   E6                   
H7     -149.4°   78.3°   90.8° -102.1° -149.3°  -79.4°   H7            
H8      -46.8° -165.3°  -91.9°   85.0°  -67.6°  -77.7° -113.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3paea_ :   (THR120)  (LEU206)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d4jf4b_ :   (THR118)  (LEU204)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d2jc7a_ :   (THR120)  (LEU206)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d4jf4a_ :   (THR118)  (LEU204)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d3paga_ :   (THR120)  (LEU206)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d1nrfa_ :   (LEU443)  (ILE526)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin receptor BlaR, C-terminal domain |Bacillus licheniformis [TaxId: 1402]
 d4f94a_ :   (THR120)  (LEU205)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.3