Protein Concepts Dictionary

Tableau information

Concept source:  d3vlka1  amino acid (a.a.) range (LEU152)(SER347)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHHEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU152)  (GLY165) H1
	  (ASP229)  (ALA245) H2
	  (ASP248)  (THR260) H3
	  (PHE261)  (ALA267) E4
	  (GLY306)  (THR312) E5
	  (GLY321)  (LEU327) H6
	  (TYR329)  (PRO333) E7
	  (GLN342)  (SER347) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -124.0°   H2                                               
H3       69.6°  106.9°   H3                                        
E4      110.0°  120.7°  -68.9°   E4                                 
E5      -44.0°  -81.9°  -92.4° -153.6°   E5                          
H6       76.8° -145.8°  106.0°   64.2°  105.9°   H6                   
E7      138.3°   96.3°   90.3°   29.2° -177.1°  -74.3°   E7            
E8       -7.4° -121.5°  -76.9° -115.0°   40.0°   75.2°  142.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3vlka1 :   (LEU152)  (SER347)   [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Haloarcula marismortui [TaxId: 272569]
 d3vlhb1 :   (SER148)  (SER347)   [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Haloarcula marismortui [TaxId: 272569]
 d3wnua1 :   (SER147)  (ILE349)   [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Synechococcus elongatus [TaxId: 1140]
 d1itkb1 :   (SER148)  (PRO345)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Haloarcula marismortui [TaxId: 2238]
 d1ub2a1 :   (SER146)  (ILE349)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Synechococcus elongatus PCC 7942 [TaxId: 1140]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.93