Protein Concepts Dictionary

Tableau information

Concept source:  d1sbka_  amino acid (a.a.) range (THR8)(PRO104)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHEEHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR8)   (GLU17) H1
	   (MSE20)   (ASP25) H2
	   (GLU29)   (ASP33) E3
	   (THR35)   (PRO41) E4
	   (GLY55)   (THR74) H5
	   (GLU77)   (GLY82) E6
	   (LEU83)   (ASN88) E7
	   (VAL98)  (PRO104) E8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -103.1°   H2                                               
E3      128.8°  121.3°   E3                                        
E4      -45.1°   59.6°  167.7°   E4                                 
H5      126.2° -124.9°  -43.4°  147.9°   H5                          
E6      -68.9°   63.9°  107.3°  -61.3°  150.7°   E6                   
E7      -97.6°   27.5°  109.9°  -64.9°  136.2°  -39.5°   E7            
E8      113.6° -140.6°  -19.7°  158.7°  -37.1°  116.3°  128.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1sbka_ :     (THR8)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein YdiI |Escherichia coli [TaxId: 562]
 d3lmbb_ :     (THR6)  (HIS108)   [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 194439]
 d2b6ed_ :     (THR8)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Haemophilus influenzae [TaxId: 727]
 d1sc0a_ :     (THR8)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein HI1161 |Haemophilus influenzae [TaxId: 727]
 d1vi8g_ :     (THR8)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein YdiI |Escherichia coli [TaxId: 562]
 d2b6ef_ :     (THR8)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Haemophilus influenzae [TaxId: 727]
 d3lmba_ :     (THR6)  (HIS108)   [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 194439]
 d2b6ea_ :     (LEU9)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Haemophilus influenzae [TaxId: 727]
 d4k49a_ :     (THR8)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein YdiI |Escherichia coli [TaxId: 562]
 d3lz7b_ :     (THR8)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein HI1161 |Haemophilus influenzae [TaxId: 727]
 d4k4ca_ :     (THR8)  (PRO104)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Escherichia coli [TaxId: 83333]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.38