Protein Concepts Dictionary

Tableau information

Concept source:  d2rl3b_  amino acid (a.a.) range (SER162)(GLY262)

nSSEs in this Concept: 8

String of secondary struct.elems. (SSEs) defining this concept: HHEEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER162)  (ASN176) H1
	  (LYS182)  (VAL193) H2
	  (THR194)  (PRO198) E3
	  (TYR200)  (GLY210) E4
	  (PRO217)  (VAL223) E5
	  (GLY224)  (GLU229) E6
	  (GLU231)  (ASP240) E7
	  (ASN243)  (GLY262) H8

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                      
H2     -117.1°   H2                                               
E3      -57.2°  -86.1°   E3                                        
E4      139.9°   80.0°  162.1°   E4                                 
E5      -26.3° -110.4°  -32.5°  165.3°   E5                          
E6      -49.1°  -91.9°   -8.2° -170.2°   24.4°   E6                   
E7      146.5°   64.4°  148.2°  -15.6°  169.7°  155.5°   E7            
H8      -62.0° -104.0°  -23.5°  153.5°  -36.4°  -24.3°  151.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2hp6b_ :   (SER162)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d2hp6a_ :   (SER162)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d2hp5a_ :   (SER162)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d2wkib_ :   (SER162)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d1h8ya_ :   (SER162)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-13 [TaxId: 287]
 d2wgva_ :   (SER162)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.3